BAC Information

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BAC

Clone NameMSMg01-376P10
Chromosome12 (Build37)
Map Location 31,150,832 - 31,151,424
singlet/doubletsinglet
Overlap genenone
Upstream geneMyt1l, LOC100043496, Pxdn, Tpo, Sntg2
Downstream geneTmem18, LOC100043055, Acp1, Sh3yl1, LOC629656, 9030611O19Rik, LOC668781, LOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1, Dld, LOC668786, Slc26a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-376P10.T7 (MSMg01no376_p10.b1)MSMg01-376P10.TJ (MSMg01no376_p10.g1)
ACCAG482156AG482157
length1,211733
length of high quality
(start - end)
---592 (72 - 663)
definitionCHROMAT_FILE: MSMg01no376_p10.b1 PHD_FILE: MSMg01no376_p10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:59 2005CHROMAT_FILE: MSMg01no376_p10.g1 PHD_FILE: MSMg01no376_p10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCTTTGTTGTTTTCNCGCGCCGAGAGATGTGAGGTATTTTCCCCACAAG
GAATACGCAGGAAATCTCCTAGATTGTATTCCTTTTGAGGATAGAAGAGG
AAGAAAAATAGTAAAATTAAAATCGACCCACTATATATATTACTAAGTAA
TAGGCGCCATTATGCTGTAAGAGTACTCTTGTCGAGTCTTGTCTCCGACT
CCGTGTTCTGTTACTACTAGAGATGGTAGATCACTCATGATGCTGTTCCT
TCGTACTCTACTGCGATGGCATGATGGATAGAGAGTTGTTCGTAGATTTC
GTTATGCGTTCTGGCTGCGTCTGCCCCGTTGGTGACTTGTTAGCTCTTGC
GCTTCATTGTTAGTACCTCTTCACGATATCCTTCATCACTCTATGCGGGT
CAGCACACACGCACGGCGCCGTGATAGTCTACGGAAGAACACTAGCGAGA
GCAGCACCGCGTGCGGTGGCCAATATGCCTGATCTAGTACTACCGGTGTG
TCCTCTCGCAGCTAGCTCCTGCGGCACCTTACATTCGTTCTCTCTTAAAA
GCGAAAGAAGAGGTCATCCTATACTTCGATAATGGCACTCTTGCGTTCGT
ACGATATCTTAATCGTATTTATCCACACCCAGTGTCCAACGCAACGGCAC
GAGACCTCGCGGCGGCATGTCAGGCACGCGCACTCATGAGAACAGTGTTA
GTATACAATGTCTCTCCTCATGCGCTGCTCTCCGCTGCGAGTCCGCAACG
CTACTTCGCTTATTACGACTNATCGATTCATCCTGATGTATCGTATCACT
ACTATCTACTTATAACTTATATATGGTGATGCACCACGCTGAGATATGCG
TACTATCCACGTACATCTATAAGCTCTCATCTCAATCGCGTCTCTACGCT
GCCCGATGACAGAGCCGTGCTATCACACTCGATCACGCGAACTGCGACAA
CTCTCGATCACGATCGTACTCTTCACACAAGATACACGTCGCTGTTATGA
TCGTAGTCCTTTGTCAATCACACAGCATAAATCACAATACAAGTCTACGT
CAGATTAACACCTGGACGGTGAGGCGTGCTAATGATCTCAACGTGATCAC
GTTCGAGATACCGCGATTCACTCTCTATATATACACGGTATCGTCAACGT
CTNGTCTCGACTTTCTCTTGCGAATCAGTACGAGCTCACGAGTCACACAC
GTGAGATATCN
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGTACTGACTTATATTCAGGGCATCTGCC
TACAGTTTCTGAAACTGCTACATTCCTGTCCCTCACACTACAGGTGACCT
TCTCCAATTTGACTCCAGAGCTGCCTGTGTTCCTGTAACTGTATCACTGT
CTTATCCATTTTCTATTATCTAGACATTTATTTTTACCCCACCCTTTCTT
GGTATCAATAATGCCTTGTGTTTATTTTATGATGGAATTCTGCTAATATT
TTCAAGTTACATTTCCTCTCAAATCTCTAAATAGTCCCACGTGTTCCCCA
AAAGACACACCAACATTTAAAAAACCTACCAACAATATATGATCAAATGA
AGTTAATTAGCAGTAGCCTTTTAATGCTATAAGATACTCAGCCATTCCTT
TTATTTCTGCACTTATCCTAACAGCTTCAAAAAATGCATTTTAAAATAGA
TTGTGCATTTGGAAAAAAAACAGAAAAATCACATAAATTATTTTGACAAA
TATATCCCCTAAGGTTTTTCTGGACAGCCTTCTTTTACAGGATACCCAGC
CAGCCATTTGTAACTTAGCATCCCATTCACAAACTTTTGGATTCACATTT
CCCAGGGTTGGTTTTAAAAAGTGTTTTGTCTGTTCCTTTTATTTCAAGAG
GTCCAAATGCTTGTTTCAATTTGCCCAGGCTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no376_p10.g1 MSMg01no376_p10.g1 CHROMAT_FILE:
MSMg01no376_p10.g1 PHD_FILE: MSMg01no376_p10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:59 2005
         (592 letters)



>mm_chr12_31150632_31151624
          Length = 993

 Score = 1131 bits (585), Expect = 0.0
 Identities = 591/593 (99%), Gaps = 1/593 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtactgacttatattcagggcatctgcctacagtttctgaaactgctacattcctgtcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtactgacttatattcagggcatctgcctacagtttctgaaactgctacattcctgtcc 260

                                                                       
Query: 61  ctcacactacaggtgaccttctccaatttgactccagagctgcctgtgttcctgtaactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcacactacaggtgaccttctccaatttgactccagagctgcctgtgttcctgtaactg 320

                                                                       
Query: 121 tatcactgtcttatccattttctattatctagacatttatttttaccccaccctttcttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatcactgtcttatccattttctattatctagacatttatttttaccccaccctttcttg 380

                                                                       
Query: 181 gtatcaataatgccttgtgtttattttatgatggaattctgctaatattttcaagttaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtatcaataatgccttgtgtttattttatgatggaattctgctaatattttcaagttaca 440

                                                                       
Query: 241 tttcctctcaaatctctaaatagtcccacgtgttccccaaaagacacaccaacatttaaa 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttccactcaaatctctaaatagtcccacgtgttccccaaaagacacaccaacatttaaa 500

                                                                       
Query: 301 aaacctaccaacaatatatgatcaaatgaagttaattagcagtagccttttaatgctata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaacctaccaacaatatatgatcaaatgaagttaattagcagtagccttttaatgctata 560

                                                                       
Query: 361 agatactcagccattccttttatttctgcacttatcctaacagcttcaaaaaatgcattt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agatactcagccattccttttatttctgcacttatcctaacagcttcaaaaaatgcattt 620

                                                                       
Query: 421 taaaatagattgtgcatttggaaaaaaaa-cagaaaaatcacataaattattttgacaaa 479
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 621 taaaatagattgtgcatttggaaaaaaaatcagaaaaatcacataaattattttgacaaa 680

                                                                       
Query: 480 tatatcccctaaggtttttctggacagccttcttttacaggatacccagccagccatttg 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tatatcccctaaggtttttctggacagccttcttttacaggatacccagccagccatttg 740

                                                                
Query: 540 taacttagcatcccattcacaaacttttggattcacatttcccagggttggtt 592
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 taacttagcatcccattcacaaacttttggattcacatttcccagggttggtt 793


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 993
Length adjustment: 10
Effective length of query: 582
Effective length of database: 983
Effective search space:   572106
Effective search space used:   572106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)