NCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAAATGTACCAGGTATAGATTAAAGATAGTAAGACATTATTT
AGCATAGGACTGGACAACTCATAAGCCATACAAATTTAAATACTGCATCT
ACAAGGCACTATGGTGTTGCGTAGCTTAGAACACTGGCCTTCCCTTACAG
GTAGGCAGAATCACCTAAACCGGAGACAGATGTATGGTGAAACGTTCACT
CTCTGACATGATTTATTAAGAAAGTCTACTGAAAAGGCAGAACAGAATCT
GTGTGTGCTCAAGCTAGCATTATCTGAAGGAGAATCTTAGCAAACAACCT
AGTTTTGTTATGTTTTGAGAGTATGATATAATTTATTTAATATCATTTAG
CTCTTCCAGTTCTTCCCTCCTCTTCTTTCCATGTACCATGTGTGTGTGTG
TGGGGGGGGGGTTTNNTTTTTTTTTNTTTTTTTNTNTNTTTTTTTTTTTT
TTTTTTTTTNTTTTTTTTTTTTTTTTTNNTTTNTTTTTTTTTTTTTNTTT
TTTTTTTTNTTTTTTTTTTNNNTTNTNNTNTTTTNTTTTTTNTTTTTTTT
TTTTTNTTTTTTTTTTTTTTTTTTTTTNTTTTTTNNNTTNTTTTTTTTTT
TTTNNGTTTTTTTNGTTCGTTTTTTTTTTTTTTTTTTTGGGTTTTTTGGG
TTTTTTTGTTTTGTTTTGTGGTNGTTCCTTTTTTCTTTTTG

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACCTTTATATTCAACCTAGG
AAATTTCAAGATTCTATGGAGTCATAGGAACTTGTCCTCTAACTCAGTGA
CTTTAAAATTTTATTCTTGACTTAGATACTGTTATTGGCTGAATTTTTAT
CCTAAAAATGTATGTTGAAGTTCTGACTCAGTACTTGATAATGTGGCTGT
ATTTAGCAATGGGGTCTTTGCAGATGCAATCAAGTTACGATGAGGTCATG
CTGAATTAGAGTGTGCTCTTAATCAAATATGAATGATTCTCCCATAAAAA
GAAAGGGTTTAGACATTCTGGAGACACATAATTGGGCCAGGTGCTAAAGG
GCAAACAGCACATAACAAGATAGGCAGGGACTAAAGTATAAATGCATGCA
GATTCCAGGAGCCAGAAGGAAGGACCAATTCTTTTTCATAGCGTTTGGAG
AGACCAGATCCTGCTGGCTTCTTCACTTCAGATCTACATCTACAGAGCAA
TAGGAAAAATCTTCTGGTTTCTGGTTGTTTGGTTATATTTTTGCATTTAT
TATATAAAAGCTCTATAATTCCCCAAATCTTTATGGATGTTGCCCTGATT
AAACATTCATGAAAAGTCCCCACGCGACCCTTCGAAAAAGGTCACTTCCT
GTCTCTCCCCCCCACTCCCTTTTTTATAAAACTCTGTTTTTCCCCTTTAT
TAATAC

Query= MSMg01no377_l12.b1 MSMg01no377_l12.b1 CHROMAT_FILE:
MSMg01no377_l12.b1 PHD_FILE: MSMg01no377_l12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:00 2005
         (415 letters)



>mm_chr12_96390121_96390932
          Length = 812

 Score =  716 bits (370), Expect = 0.0
 Identities = 399/410 (97%), Gaps = 5/410 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaaatgtaccaggtatagattaaagatagtaagacattatttagcataggactg 63
           |||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 ggaattcaaatggagaaggtatagattaaagatagtaagacattatttagcataggactg 550

                                                                       
Query: 64  gacaactcataagccatacaaatttaaatactgcatctacaaggcactatggtgttgcgt 123
           |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 549 gacaacacataagccatacaaatttaaatactgcatctacaaggcactacggtgttgcgt 490

                                                                       
Query: 124 agcttagaacactggccttcccttacaggtaggcagaatcacctaaaccggagacagatg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 agcttagaacactggccttcccttacaggtaggcagaatcacctaaaccggagacagatg 430

                                                                       
Query: 184 tatggtgaaacgttcactctctgacatgatttattaagaaagtctactgaaaaggcagaa 243
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tatggtgaaactttcactctctgacatgatttattaagaaagtctactgaaaaggcagaa 370

                                                                       
Query: 244 cagaatctgtgtgtgctcaagctagcattatctgaaggagaatcttagcaaacaacctag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 cagaatctgtgtgtgctcaagctagcattatctgaaggagaatcttagcaaacaacctag 310

                                                                       
Query: 304 ttttgttatgttttgagagtatgatataatttatttaatatcatttagctcttccagttc 363
            |||||||||||||||||||   |||||||||||||||||||||||||||||||||||||
Sbjct: 309 -tttgttatgttttgagagt---atataatttatttaatatcatttagctcttccagttc 254

                                                             
Query: 364 ttccctcctcttctttccatgtaccatgtgtgtgtgtgtg-ggggggggg 412
           |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 253 ttccctcctcttctttccatgtaccatgtgtgtgtgtgtgtggggggggg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 812
Length adjustment: 9
Effective length of query: 406
Effective length of database: 803
Effective search space:   326018
Effective search space used:   326018
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)