Query= MSMg01no377_l14.b1 MSMg01no377_l14.b1 CHROMAT_FILE:
MSMg01no377_l14.b1 PHD_FILE: MSMg01no377_l14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:00 2005
(499 letters)
>mm_chr12_90794192_90795090
Length = 899
Score = 936 bits (484), Expect = 0.0
Identities = 493/496 (99%)
Strand = Plus / Minus
Query: 4 ggaattcaatgtacctaggatcctgacacctacagtaggaaaagcttgtgcctgaataat 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 ggaattcaatgtacctaggatcctgacacctacagtaggaaaagcttgtgcctgaataat 640
Query: 64 cccagccacacccagtggaatgtcatcctaagagaagcaggtgatccatgccacactagc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 cccagccacacccagtggaatgtcatcctaagagaagcaggtgatccatgccacactagc 580
Query: 124 tagagccactggtaactgaagaagcagcatcacgggagagagccatcatgtcaacagcaa 183
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 579 tagagccactggtaactgaagaagcagcatcaagggagagagccatcatgtcaacagcaa 520
Query: 184 ggaaagtggaggtagagctggtatcttttatagatatggcaaaagagtggagagctggca 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 ggaaagtggaggtagagctggtatcttttatagatatggcaaaagagtggagagctggca 460
Query: 244 aatggttctaaggtgccagagaaggaatacagagacgtggaagccagcagacatccaggt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 aatggttctaaggtgccagagaaggaatacagagacgtggaagccagcagacatccaggt 400
Query: 304 tgctaacatctcttggtctgcagccctaggctaagagtgagaactgaatgttgcaagagg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 tgctaacatctcttggtctgcagccctaggctaagagtgagaactgaatgttgcaagagg 340
Query: 364 tcaagtggtcatgatgagtacaatattagatgtgtatctacttgcctactgcccctgctc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 tcaagtggtcatgatgagtacaatattagatgtgtatctacttgcctactgcccctgctc 280
Query: 424 tcggatgccaaacactgggaggctacaatagatcctatagctgagtatttaaatagcttc 483
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 tcggatgccaaacattggggggctacaatagatcctatagctgagtatttaaatagcttc 220
Query: 484 ttatctacctctaatt 499
||||||||||||||||
Sbjct: 219 ttatctacctctaatt 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 899
Length adjustment: 10
Effective length of query: 489
Effective length of database: 889
Effective search space: 434721
Effective search space used: 434721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no377_l14.g1 MSMg01no377_l14.g1 CHROMAT_FILE:
MSMg01no377_l14.g1 PHD_FILE: MSMg01no377_l14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:00 2005
(478 letters)
>mm_chr12_90601112_90601989
Length = 878
Score = 814 bits (421), Expect = 0.0
Identities = 463/481 (96%), Gaps = 8/481 (1%)
Strand = Plus / Plus
Query: 1 ttgatcagacaaagccagctaggccttatgaatgaacaagcaaatattgagttgtttctt 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 ttgatcagacaaagccagctaggccttatgaatgaacaagcaaatattgaattgtttctt 260
Query: 61 atatttaagaaaagctatactttaaaatgtcaggatgaaaagccaatgtatgagaagtat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atatttaagaaaagctatactttaaaatgtcaggatgaaaagccaatgtatgagaagtat 320
Query: 121 ccagtagcctgtttaactgattttccaatgcaatagacctaacaaattaattaatcaatc 180
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 ccagtagcctgtttaactgattttccaatgcaatagacctaataaattaattaatcaatc 380
Query: 181 acaggttcttcccatgttatttctttttttaaaaaaaa---ttttattaggtattttcct 237
|||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 381 acaggttcttcccatgttatttcttttttt-----taatttttttattaggtattttcct 435
Query: 238 catttacatttccaatgctatcccaaaaatcccccataccctcccccctactcccctacc 297
|||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct: 436 catttatatttccaatgctatcccaaaagtcccccataccctcccccccactcccctacc 495
Query: 298 cacccactcccacttcttggccctggcgttcccctgtgctgaggcacataaagtttgcat 357
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 496 cacccactcccacttcttggccctggtgttcccctgtgctgaggcacataaagtttgcat 555
Query: 358 gaccaatgggcctctctttccactgatggccaactagaccatcttctgatacatatgcag 417
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 gaccaatgggccactctttccactgatggccaactagaccatcttctgatacatatgcag 615
Query: 418 ctagagacacgagctccggggggtactggatagttcatattgttgttctacctatagggt 477
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct: 616 ctagagacacgagctccggggggtactggctagttcatattgttgttccacctatagggt 675
Query: 478 t 478
|
Sbjct: 676 t 676
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space: 406224
Effective search space used: 406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
