BAC Information

Click to search

BAC

Clone NameMSMg01-378G18
Chromosome12 (Build37)
Map Location 30,247,346 - 30,408,053
singlet/doubletdoublet
Overlap geneMyt1l, LOC100043496
Upstream geneAllc, Colec11, Rps7, Rnaseh1, Adi1, Ttc15, Tssc1, 4833405L11Rik, LOC629608
Downstream genePxdn, Tpo, Sntg2, Tmem18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-378G18.T7 (MSMg01no378_g18.b1)MSMg01-378G18.TJ (MSMg01no378_g18.g1)
ACCAG483272AG483273
length770760
length of high quality
(start - end)		520 (49 - 568)487 (79 - 565)
definitionCHROMAT_FILE: MSMg01no378_g18.b1 PHD_FILE: MSMg01no378_g18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:55 2005CHROMAT_FILE: MSMg01no378_g18.g1 PHD_FILE: MSMg01no378_g18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,247,346 - 30,247,862)(30,407,567 - 30,408,053)
sequence
NNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAGCTTGTATGGTTCACTTCATCGGTTTCTTTACCTCACATCT
TCTTTTATGTCCTTAAGTCACACAAACCAGATCAACACAACTGGTTCTTG
CTGCTGTTTTCAAACACAGCACCCTTGTTTGGGGCAGGAGAGAAAGGACA
CACACTCCAGTGAATAAAGAAATATCAATGAAAAAAGCTTTTTCAGGTGC
ACTCTGTCCATGTGATCCTCAACAAATGTGTGTTCCATCTGCCATTCAGT
GTGACCTTAGGCACTCAGGTGGAGCTGTGGTCCACGGAAGAGTTGTCTAA
GGCTCCAGATTGGTCAGAACTACCTGATGTATCCCTATATACTAATGCCA
TATACTGTCTCTTGTGATTGTGTGCCTAGCTTCATGATGATGGTGAACTG
TCTGGACAACTTGTAGTGTGTCATAACATGAACTCTGACTCCTGTAGGAT
CCCAAATCAAACTGGGGAATGTATTCTCTAGGAGACAAAGGGCCTCTCTG
CACCTCTGTTATCTGCCCTTANAGAAGGTTGGGACCTGGTGTAAGTGAGG
CGTGCTGGGCTCTGGAGTTTTCCGATTCCATGAACTAAGAACTGGATTTT
CAACCTGAACATTGCCCTGGGTCCTATCCTCAAACCAAACTAAGACAGTT
TGTAAGGTACCCCAAAACAAAAGCGGCAAAATATCCCTGTCGGTACCCCG
CTCATCTAAAAAAGAAAGGG

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACCCATGAACTTTCAGAATTAA
TCTACCACCTTGTATAACAAGCAGAGACTGTATACATCCATCTGGAAGCT
ACCACAAGAGTCCTTTCTGCTCCTTGATCCTTGGCCAGTGCTATACTGGG
TACATGTCTAGACAATACCAGGATCCATGCTCTGGGTAGTATAGTCTGTG
ATTGCTACCTCCCAGCTTGCCTCTGTCTGTTTTGTTTCCTTTTTGTGGGA
AATAACTCCATAGCTTCCTAAGGAAAGGATCTTGGAGGATAATGTTTTCA
AAATATTTTTAAATATTAGGATATCTTGTCTTGCCACCTAAATACATTAG
GAATGTAAGTCACAAAGTCAAAATTGGTAAAAAGAAAAAAGAAAAACAAC
AACAGCAACAGCAACAGCAACAGCAACAGCAGCAGCAGCAGCAGCAGCAG
CAGCAACAACAACAACAACAACAACATCCCAGACATCCGAAGCTCAATTC
GAAGCTTTCCTTACACTCCATGTCCAGGACTATTAGAATCCTCTTGCTTC
TAATATTTTTGGAATCTTCCTCCAACAGGAAGGGGAGCTACTCCCCGGTT
CCTACGATCAATCTGGTATTGTTCAAGAAAAGTGCTCCTTAACTCTGAAC
CCAAAACTTGAGTTTTCTATGAAAAAGAGAATTTTTAAATCTACCTGGTC
CCTCCCTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no378_g18.b1 MSMg01no378_g18.b1 CHROMAT_FILE:
MSMg01no378_g18.b1 PHD_FILE: MSMg01no378_g18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:55 2005
         (520 letters)



>mm_chr12_30247143_30248062
          Length = 920

 Score =  992 bits (513), Expect = 0.0
 Identities = 516/517 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcagcttgtatggttcacttcatcggtttctttacctcacatcttcttttatgtc 63
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagcttgaatggttcacttcatcggtttctttacctcacatcttcttttatgtc 263

                                                                       
Query: 64  cttaagtcacacaaaccagatcaacacaactggttcttgctgctgttttcaaacacagca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cttaagtcacacaaaccagatcaacacaactggttcttgctgctgttttcaaacacagca 323

                                                                       
Query: 124 cccttgtttggggcaggagagaaaggacacacactccagtgaataaagaaatatcaatga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cccttgtttggggcaggagagaaaggacacacactccagtgaataaagaaatatcaatga 383

                                                                       
Query: 184 aaaaagctttttcaggtgcactctgtccatgtgatcctcaacaaatgtgtgttccatctg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aaaaagctttttcaggtgcactctgtccatgtgatcctcaacaaatgtgtgttccatctg 443

                                                                       
Query: 244 ccattcagtgtgaccttaggcactcaggtggagctgtggtccacggaagagttgtctaag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ccattcagtgtgaccttaggcactcaggtggagctgtggtccacggaagagttgtctaag 503

                                                                       
Query: 304 gctccagattggtcagaactacctgatgtatccctatatactaatgccatatactgtctc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gctccagattggtcagaactacctgatgtatccctatatactaatgccatatactgtctc 563

                                                                       
Query: 364 ttgtgattgtgtgcctagcttcatgatgatggtgaactgtctggacaacttgtagtgtgt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttgtgattgtgtgcctagcttcatgatgatggtgaactgtctggacaacttgtagtgtgt 623

                                                                       
Query: 424 cataacatgaactctgactcctgtaggatcccaaatcaaactggggaatgtattctctag 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cataacatgaactctgactcctgtaggatcccaaatcaaactggggaatgtattctctag 683

                                                
Query: 484 gagacaaagggcctctctgcacctctgttatctgccc 520
           |||||||||||||||||||||||||||||||||||||
Sbjct: 684 gagacaaagggcctctctgcacctctgttatctgccc 720


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space:   464100
Effective search space used:   464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no378_g18.g1 MSMg01no378_g18.g1 CHROMAT_FILE:
MSMg01no378_g18.g1 PHD_FILE: MSMg01no378_g18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:55 2005
         (487 letters)



>mm_chr12_30407488_30408374
          Length = 887

 Score =  942 bits (487), Expect = 0.0
 Identities = 487/487 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   acccatgaactttcagaattaatctaccaccttgtataacaagcagagactgtatacatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 acccatgaactttcagaattaatctaccaccttgtataacaagcagagactgtatacatc 507

                                                                       
Query: 61  catctggaagctaccacaagagtcctttctgctccttgatccttggccagtgctatactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 catctggaagctaccacaagagtcctttctgctccttgatccttggccagtgctatactg 447

                                                                       
Query: 121 ggtacatgtctagacaataccaggatccatgctctgggtagtatagtctgtgattgctac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ggtacatgtctagacaataccaggatccatgctctgggtagtatagtctgtgattgctac 387

                                                                       
Query: 181 ctcccagcttgcctctgtctgttttgtttcctttttgtgggaaataactccatagcttcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ctcccagcttgcctctgtctgttttgtttcctttttgtgggaaataactccatagcttcc 327

                                                                       
Query: 241 taaggaaaggatcttggaggataatgttttcaaaatatttttaaatattaggatatcttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 taaggaaaggatcttggaggataatgttttcaaaatatttttaaatattaggatatcttg 267

                                                                       
Query: 301 tcttgccacctaaatacattaggaatgtaagtcacaaagtcaaaattggtaaaaagaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tcttgccacctaaatacattaggaatgtaagtcacaaagtcaaaattggtaaaaagaaaa 207

                                                                       
Query: 361 aagaaaaacaacaacagcaacagcaacagcaacagcaacagcagcagcagcagcagcagc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 aagaaaaacaacaacagcaacagcaacagcaacagcaacagcagcagcagcagcagcagc 147

                                                                       
Query: 421 agcagcaacaacaacaacaacaacaacatcccagacatccgaagctcaattcgaagcttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 agcagcaacaacaacaacaacaacaacatcccagacatccgaagctcaattcgaagcttt 87

                  
Query: 481 ccttaca 487
           |||||||
Sbjct: 86  ccttaca 80


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space:   418329
Effective search space used:   418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |