NNTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTACAGTTTTTATATGAAGGCTGCTAGCAGAATACTGACTTTG
AGGCAGCTAGGACAAGGGTCTTATTTTCCACACCCACAGTGACACACCTA
CTTCAACAAGGCCACACCTCCTCCAACAGGGCTACACCTTCTAATACTGC
CACTACCTGGGTCGAACATACATAAGCTATCACACCTCCTAACCCACATC
CAGTCCACATCATCCCCTACTCTTACTACCTTCTCCCTGTCTAGAGTCTC
TCCAATTCTATCTATTATACCTCTTAGAGTACTGACCAAGATAACACAGT
CACTTCCTAGATTATAGCAACATTTTCAAAATGGTTATCCTCAACCTGCC
TTTACTCGAATTCTGATTAAGTTATCCAGAGTACAGCCAGAGTAATTTTT
TTAAAATATAGTTAACACCATACCAACTCCTCAAAGTCACAGCATCTTCT
CAGCTGGCTAAATGTACTGATGTATATCACCATGATACAATGTAATGATC
AAACAGATAAACAGATAAAATTCTAAACATGGTTAGAATTATGAAAACTT
ACAGAAGGTCAAAAGGCATATTAAATAAAGTTTTGAATATGTAGATGGAT
ACTACTATTATTATTAACAAGAANAATCTTTGTGGAAGTCTCTAGACAAA
GTCTTCAATAAATTAAACTAAACAATAAGCAAATCAAGTATCAN

CGATGAAGTGCGAGGCCTGGGGGCGCCTGGCTTCGGATTGGGGNGAACNA
NAGAAGGATTGCAGCAGTGGGGAGCCAACGAACCCCGGGAGGANANNNAA
ANGGCANCAANTGTTTCAGCGAGAAACAGNGAAAGAANANGGGAACATTN
CGGCTNTCTATTTGTTTTTAATTTTATTTTTATTAAATTATTTTATTTAT
TTACATTCTAAATATGGTTCCCTGTCTTGGCTCCTACCATTCTAATTCCT
TTTTGATTATGAGAGGTGCTCCTCCACACCCTTATCTCCCCTCTGCCAGC
ACTCCCATTCTATGGGTTTTTAATTTTCNACAGGANNAGGNGAANCCTCT
CCCACAGAGGTCACACAACGCAGTCCTCTGCTACATATGTGACGGGGCCA
CAGACCAGCCCATGTTTGTTGACACTTGTTCTTTGTATGGGTTTGCAATC
CACTTCAGCTCCTTCAATCCTTCCCCTAACTCTTCTATATGGGTCCCCAC
CTCAGTCCAGTGGTTGGCTGTATCTACATCTGTCTTGGTCAGCTGCTGGT
AGAGCCTCTCTGAGGCTTTCTTTAAGCTCATTTAGACCTTCTGTAATCCT
TCTGCATTCAAATCTGTTTTGAAGCACTCTCTCAATTTTGATTGCTCTCT
GGTCATTTTTTTTTTTCGNANACATGGCAAAAACTAAGCTATTCTAAAGA
GACCATTGACTCTTTCAATCTAACTATCAGGGGATTTAAATGAGAATTTC
CAN

Query= MSMg01no378_p23.b1 MSMg01no378_p23.b1 CHROMAT_FILE:
MSMg01no378_p23.b1 PHD_FILE: MSMg01no378_p23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:38 2005
         (616 letters)



>mm_chr12_67093939_67094951
          Length = 1013

 Score = 1120 bits (579), Expect = 0.0
 Identities = 603/613 (98%), Gaps = 5/613 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctacagtttttatatgaaggctgctagcagaatactgactttgaggcagctagga 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 995 gaattctacagttttcatatgaaggctgctagcagaatactgactttgaggcagctagga 936

                                                                       
Query: 65  caagggtcttattttccacacccacagtgacacacctacttcaacaaggccacacctcct 124
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 935 caagggtcttatttcccacacccacagtgacacacctacttcaacaaggccacacctcct 876

                                                                       
Query: 125 ccaacagggctacaccttctaatactgccactacctgggtcgaacatacataagctatca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 ccaacagggctacaccttctaatactgccactacctgggtcgaacatacataagctatca 816

                                                                       
Query: 185 cacctcctaacccacatccagtccacatcatcccctactcttactaccttctccctgtct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 cacctcctaacccacatccagtccacatcatcccctactcttactaccttctccctgtct 756

                                                                       
Query: 245 agagtctctccaattctatctattatacctcttagagtactgaccaagataacacagtca 304
           ||||||||||||||    |||||||||||||||||| |||||||||||||||||||||||
Sbjct: 755 agagtctctccaat----tctattatacctcttagaatactgaccaagataacacagtca 700

                                                                       
Query: 305 cttcctagattatagcaacattttcaaaatggttatcctcaacctgcctttactcgaatt 364
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 699 cttcctagattatagcaacattttcaaaatggttatcctcaacctgcctttactagaatt 640

                                                                       
Query: 365 ctgattaagttatccagagtacagccagagtaatttttttaaaatatagttaacaccata 424
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 639 ctgattaagttatccagagtacagccagagtaatttctttaaaatatagttaacaccata 580

                                                                       
Query: 425 ccaactcc-tcaaagtcacagcatcttctcagctggctaaatgtactgatgtatatcacc 483
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 ccaactccttcaaagtcacagcatcttctcagctggctaaatgtactgatgtatatcacc 520

                                                                       
Query: 484 atgatacaatgtaatgatcaaacagataaacagataaaattctaaacatggttagaatta 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 atgatacaatgtaatgatcaaacagataaacagataaaattctaaacatggttagaatta 460

                                                                       
Query: 544 tgaaaacttacagaaggtcaaaaggcatattaaataaagttttgaatatgtagatggata 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 tgaaaacttacagaaggtcaaaaggcatattaaataaagttttgaatatgtagatggata 400

                        
Query: 604 ctactattattat 616
           |||||||||||||
Sbjct: 399 ctactattattat 387


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1013
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1003
Effective search space:   607818
Effective search space used:   607818
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)