Query= MSMg01no379_f05.b1 MSMg01no379_f05.b1 CHROMAT_FILE:
MSMg01no379_f05.b1 PHD_FILE: MSMg01no379_f05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:04 2005
(516 letters)
>mm_chr12_79893006_79893921
Length = 916
Score = 897 bits (464), Expect = 0.0
Identities = 479/484 (98%)
Strand = Plus / Minus
Query: 5 gaattcctgccttgccttcccttattgatggactgtaaagtgtaagatgaataaaacttt 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 gaattcctgccttgtcttcccttattgatggactgtaaagtgtaagatgaataaaacttt 425
Query: 65 tcttccactaggctgtttttggtcacttatttaccagttatttactaaacaacaataaac 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tcttccactaggctgtttttggtcacttatttaccagttatttactaaacaacaataaaa 365
Query: 125 tcattaaaattaaaaagactagctgtactaagcactgaaggaaggtatggagaaactgaa 184
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 364 tcattaaaattaaaaagactagatgtactaagcactgaaggaaggtatggagaaactgaa 305
Query: 185 actatatttggtagtttatgggacttaattctcttcttctactatgtgggtcccaaggat 244
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 actatatctggtagtttatgggacttaattctcttcttctactatgtgggtcccaaggat 245
Query: 245 ggaacttggatttataaagcttgccagcaagcacctttatctactgggtcttctcttcag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ggaacttggatttataaagcttgccagcaagcacctttatctactgggtcttctcttcag 185
Query: 305 tcctacataaattgtttttaaacctcactaaattgaacacttaaaatcaaatttaaatat 364
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 tcctacataaattatttttaaacctcactaaattgaacacttaaaatcaaatttaaatat 125
Query: 365 aagttttgcctatttatcaatttcaaaggaaaacaaaaccttatacacctaacaaggcat 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 aagttttgcctatttatcaatttcaaaggaaaacaaaaccttatacacctaacaaggcat 65
Query: 425 cttagagctgggtatacagcccagtcactagaattcttccttagtatgtatgcaactctg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 cttagagctgggtatacagcccagtcactagaattcttccttagtatgtatgcaactctg 5
Query: 485 tgtt 488
||||
Sbjct: 4 tgtt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space: 458436
Effective search space used: 458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no379_f05.g1 MSMg01no379_f05.g1 CHROMAT_FILE:
MSMg01no379_f05.g1 PHD_FILE: MSMg01no379_f05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:04 2005
(463 letters)
>mm_chr12_79745039_79745902
Length = 864
Score = 847 bits (438), Expect = 0.0
Identities = 458/465 (98%), Gaps = 2/465 (0%)
Strand = Plus / Plus
Query: 1 ttcatactttaatgaacatgaatctaattaaaagatagtcttctcattcttttttttt-g 59
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 201 ttcatactttaatgaacatgaatctaattaaaagataatcttctcattcttttttttttg 260
Query: 60 attaatgatttattgtttaaattaaaatgcagttacatcattcccccattcccctttctt 119
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 attaatgatttattgtttaaattaaaatgcagttacaccattcccccattcccctttctt 320
Query: 120 ttacagattatgaaaacaacttaataaagagaatctggaaacatatgtatatatatatta 179
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 ttacagattatgaaaacaacttaataaagagaatctggaaacatatgtgtatatatatta 380
Query: 180 actttaaaatattgatttatgatctattttctttccaattatagttcacagtcttatctt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actttaaaatattgatttatgatctattttctttccaattatagttcacagtcttatctt 440
Query: 240 ttatccaagttgaaaaatggataaaatttcaggcttagctatttcaatggttaaaaaaaa 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttatccaagttgaaaaatggataaaatttcaggcttagctatttcaatggttaaaaaaaa 500
Query: 300 tcttttagaaaataaaaattgagggctttttccaacgtaatttatgatgcttttttttt- 358
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcttttagaaaataaaaattgagggctttttccaacgtaatttatgatgctttttttttt 560
Query: 359 ccattttttattaggtatttagctcatttacatttccaatgctataccaaaagtccccca 418
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 561 ccattttttattaggtatttagctcatttacatttccaatgctatacaaaaagtccccca 620
Query: 419 tacccacccacccccactcccctacccacccantcccccttttta 463
|||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 621 tacccacccacccccactcccctacccacccactcccccttttta 665
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 864
Length adjustment: 10
Effective length of query: 453
Effective length of database: 854
Effective search space: 386862
Effective search space used: 386862
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
