BAC Information

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BAC

Clone NameMSMg01-379H12
Chromosome12 (Build37)
Map Location 89,236,507 - 89,236,995
singlet/doubletsinglet
Overlap geneLOC100039191
Upstream gene2310044G17Rik, Zdhhc22, Tmem63c, Ngb, Pomt2, Gstz1, EG625237, Tmed8, Gm263, 4933437F05Rik, AI413782, Ahsa1, Thsd3, Sptlc2, LOC667287, Nrp, 1810035L17Rik, Snw1, LOC100042747, EG544883, EG666806, EG633031, Oog1, LOC100042776, LOC100042778, LOC100042239, LOC100042786, BB287469, LOC100038964, LOC673658, LOC100038992, LOC100038982, LOC674027, LOC100039042, LOC100039052, LOC100039076, LOC100039087, LOC100039100, LOC100039203, LOC627873
Downstream geneLOC100039162, LOC627881, LOC100039129, LOC636517, LOC544884, LOC100039226, LOC432715, EG667350, LOC546543, EG667388, LOC627971, LOC667395, LOC100039315, EG638008, EG666862, EG435337, LOC100039154, LOC633093, LOC667440, LOC100039383, EG266459, LOC667475, LOC620915, LOC435314, Adck1, LOC100039261, EG666915, Nrxn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-379H12.T7 (MSMg01no379_h12.b1)MSMg01-379H12.TJ (MSMg01no379_h12.g1)
ACCAG484074AG484075
length763761
length of high quality
(start - end)
505 (42 - 546)489 (71 - 559)
definitionCHROMAT_FILE: MSMg01no379_h12.b1 PHD_FILE: MSMg01no379_h12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:15 2005CHROMAT_FILE: MSMg01no379_h12.g1 PHD_FILE: MSMg01no379_h12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:15 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAGCTCCTTTCTACTTTTTGATAACCCTTTTAATACTCAAACCATGTGTT
TTATACTTTGATTTTTCTCAGCTTGCTATACTTGTTTAAAATGCTGTTCA
TGAGACTTAAGCTGAGAAGAAAGTCTATGTTGGGCATTTCTGAGACTCCC
TTTGTCATTGCAATTAATATGAGTCTCTAAGCCTTCACCTCGGGCAGATT
CTTTAGATGAGGGAAAAGGGTAGCCACATTTTTTTCACCCAAAGACCACA
AAACAGTCTCTAGACCTCATATTGAAATTCTCCACTGAAATCTCTAGGGT
CAGGACTACACAATTCAGATCACACTCAGTAACAAAGTCTTTCATATTCC
TACTAAGATAGCCTGTCAAGCCCCATTGAAGCATTCCACTGCTTTTCATA
TCTAAAGTCCAAAAATCTACATTCTTCCAAACAAAAACATGGTCAGGACT
ATCATAGCAATAACACAGTCCCTGAGAGCAACTTCTGTCTGAACTAGGGT
TTCACTGCTGCAAGCAGAAACCATAAACAAGGCTACCCTTATAAAGATAA
TATTTCACTGTGTTTGGCTTACAGTTCAGAGAGGTTCTGTAGAATCCATA
TAAGTTTAGGAAAACCCAGCCCCTTCTTTCTTGAGGAAATTTTCAACTAA
TGGCCAAATGACAAAACTACAAGTGGCCAAAAAAAAGGAATTGTTTCCCA
AAAAAACCAAAAN
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAAATCATTCATTACAAAGAAATCAAAAAGA
CATAGACCAAAAACCTGGCATGTAGGACTGAAAGAAAATGATGGTGCTGG
ATAGAAGAGCACTGACTGTATATTAAGGGCCTGGGAGAGAAAGTAGGTTA
GCTGAGTCATCAACAACTCCCTTAACATAGTAAATTACTCACATCTGTAG
ATTTTTACAAGAGACAGGGTCTCTGAGTTTACCATATTGTAAGACCCCAA
ACCTCGGTCAGTGGTACCTAAAGACACCCGAGTGAAACACAGATCGATGC
AAAACAAGAGGTTTGGGCTCGAGAGATGGCTCAGTGGTTATGAGCACTGA
CTGCTCTTCTGAAGGTCAGAATTTCAAATTCCAGCAACCCAATGGTAGCT
CAAACCATCTGTAAAGAGATCTGACACCCTCCTCTGGTGCATCTGAAGAC
AGCTAGAGTGTACTTACATATAATGAATAAATCTTTTTTAAACATTTCAG
GAGCACAGGTTACATAAGCAAAAATACAGTTCTTATTGGCTAAGCATGTT
GACCTTTAAATCTATTGGCTACCAAGAATGACACCCACTTGAACTCTACC
TGGGACATTCCAGAGGTGCAGGGGGACTATCGTCCGTACATTCTGTGGTT
TTCTTCTGAGAATTTTTTTCTCAGGAAGGTCCCCCGGCTGGAGGAAGAAC
TTGCCTTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no379_h12.g1 MSMg01no379_h12.g1 CHROMAT_FILE:
MSMg01no379_h12.g1 PHD_FILE: MSMg01no379_h12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:15 2005
         (489 letters)



>mm_chr12_89236307_89237195
          Length = 889

 Score =  837 bits (433), Expect = 0.0
 Identities = 475/489 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatcattcattacaaagaaatcaaaaagacatagaccaaaaacctggcatgtaggactg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaatcattcattacaaagaaatcaaaaagacatagaccaaaaacctggcatgtaggactg 260

                                                                       
Query: 61  aaagaaaatgatggtgctggatagaagagcactgactgtatattaagggcctgggagaga 120
           ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaagaaagtgatggtgctgggtagaagagcactgactgtatattaagggcctgggagaga 320

                                                                       
Query: 121 aagtaggttagctgagtcatcaacaactcccttaacatagtaaattactcacatctgtag 180
           |||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 321 aagtagtttagctgagtcatcaacaactcccataacatagtaaattgctcacatctgtag 380

                                                                       
Query: 181 atttttacaagagacagggtctctgagtttaccatattgtaagaccccaaacctcggtca 240
           ||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 381 atttttacaggagacagggtctctgagtttaccatattgaaagaccccaaaccttggtca 440

                                                                       
Query: 241 gtggtacctaaagacacccgagtgaaacacagatcgatgcaaaacaagaggtttgggctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtggtacctaaagacacccgagtgaaacacagatcgatgcaaaacaagaggtttgggctc 500

                                                                       
Query: 301 gagagatggctcagtggttatgagcactgactgctcttctgaaggtcagaatttcaaatt 360
           |||||||||||||||||||||||||||||||||||||||||||||||  || ||||||||
Sbjct: 501 gagagatggctcagtggttatgagcactgactgctcttctgaaggtcccaagttcaaatt 560

                                                                       
Query: 361 ccagcaacccaatggtagctcaaaccatctgtaaagagatctgacaccctcctctggtgc 420
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccagcaaccaaatggtagctcaaaccatctgtaaagagatctgacaccctcctctggtgc 620

                                                                       
Query: 421 atctgaagacagctagagtgtacttacatataatgaataaatcttttttaaacatttcag 480
           ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 621 atctgaagatagctagagtgtacttacaaataatgaataaatcttttttaaacatttcag 680

                    
Query: 481 gagcacagg 489
           |||||||||
Sbjct: 681 gagcacagg 689


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space:   421041
Effective search space used:   421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)