BAC Information

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BAC

Clone NameMSMg01-380C07
Chromosome12 (Build37)
Map Location 76,836,962 - 76,837,211
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnh5, Rhoj, Gphb5, Ppp2r5e, Wdr89, LOC665931, Sgpp1
Downstream geneSyne2, Esr2, LOC665957, Tex21, Mthfd1, Akap5, Zbtb25, Zbtb1, Hspa2, Gm70, LOC100041694, Plekhg3, Spnb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-380C07.T7 (MSMg01no380_c07.b1)MSMg01-380C07.TJ (MSMg01no380_c07.g1)
ACCAG484589AG484590
length816785
length of high quality
(start - end)
252 (54 - 305)341 (65 - 405)
definitionCHROMAT_FILE: MSMg01no380_c07.b1 PHD_FILE: MSMg01no380_c07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:07 2005CHROMAT_FILE: MSMg01no380_c07.g1 PHD_FILE: MSMg01no380_c07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGCGCTATACGACTCCTATTTCGAGAGGATCCGCGGAATTCTCCACGTTA
TCTTCTCCCACTAACTATGTGTTCTGAGCAATCTTGCTAAGTGCTAAAAT
TTATTAAGGAAATTTTACACCTAAATTCGCTTAAGAGACGTATGTGATGA
GTGACAGTCAGATTTTACTTGGTAGGTGACTGGCTTTTCCTTTGCAGACC
ACAGCTGTGTCAGCGATCACATACCCAGGCTCTGTCCTGGATTATCTACG
GCTTTCTAATCTTGCCACCGCTGGTCAATTGGCACGTGGCTTTCCGGACA
TCATTTTTTTTTATACAGCTCTGAAATTAGCTGCTAATTAATGGCGTGTG
TCGGACGATTCCGGTTTCGCGGCGGTTACTTTGCCTCCATTCTTCACGCC
CCTATTGATTCCAGGTTTAATATTATTTGTCGTTTATCTCTCTGTTTCTT
CTGTCCTTGCCCCGCCCTCTCCCTGTTTCTTTTTTTTTCTTTTCTCAACT
TTTTTTTTTGCCCTTCCTTTCCTTTCCCCTTATTTTTCCTTCCTTTTTTT
TTTTATATTTTTTTCATGTCTCTCTCCACTTTTTTTTCACCTTTTATACA
ATCTCCTTCTTTTTCCCCTCCTCCCACTTACACCTTCTTTTTATTTCTCC
TCATTCTCCTTTTCCCTCTCCTATCTTTTTCTTATTTTTCCGTCTACGTT
CACCTTCTTTTTTGTACCATATTTCCCTCTTTTTCTCACCTATCTACCCC
TCACTCTTATTTTCCCCTCCATATTCTCTTTTTCTCTCTCCCCCTCTTTT
CCGCCCTCCTCCTCCA
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTCATAAGAGTCAAAAAGTAGAAACAAATGTTCACC
AACTGTCATGGTTTTAACATGCTTGGCCCAGGGAGTAACGCTATTTGGCA
GTGTGGCCTTGTTGGAGTGGGTGTGTCACTGTGGGTATGGGCTTTAAGAC
CCTCATCCTAGCTACCTGGAAGCCAGTATTCTCCTAGCAGCCTTCAGATG
AAGATGTAGAACTCTCAGCTCCTCCTGCACCATGCCTGACTGGATGCTGC
CATATTCCTTGATGCCTTGATGATAACAGACTGAACCTCTGAACCTATAG
GCCAACCCCAATTGCATGTTGTCCTTATGAGCGTTGCCTTGGTCATGGTG
TCTGCTCACAGCAGTAAATCCTAACTAAGACACCAACTGTTCCTAATTTA
AAGAGTGCTACAATGGAATATTACTCAAACATAACAAGGAATATCATTTG
GCCTATGGCGGAACCTTGGATTTACAGTGCTAAGTGAAGTATGTCAATCT
CATACTTACACACACACGCTCACTCTCTCATATTTTTTCTCTCACTCATT
ACCTTTTTACTTTATCAACCTCCGTGTTACTTCGCCCTTTTGGGTCACCC
TTACTTTCTTGCACCTGTCTCGTCCATCTCTCATTCCTACATCTCATCCC
TCTCATTATTTTTCACATTTATCTCTGGTATTCCCCTTTCCTAATCCGCC
ATCCTTTTTTCTACTGCCCCTCTTATCTTCCTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no380_c07.b1 MSMg01no380_c07.b1 CHROMAT_FILE:
MSMg01no380_c07.b1 PHD_FILE: MSMg01no380_c07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:07 2005
         (252 letters)



>mm_chr12_76836762_76837413
          Length = 652

 Score =  468 bits (242), Expect = e-136
 Identities = 248/250 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctcccactaactatgtgttctgagcaatcttgctaagtgctaaaatttattaaggaaat 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 450 tctcccactaactatgtgttctgagcaatcttgctaagtgctagaatttattaaggaaat 391

                                                                       
Query: 61  tttacacctaaattcgcttaagagacgtatgtgatgagtgacagtcagattttacttggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tttacacctaaattcgcttaagagacgtatgtgatgagtgacagtcagattttacttggt 331

                                                                       
Query: 121 aggtgactggcttttcctttgcagaccacagctgtgtcagcgatcacatacccaggctct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 aggtgactggcttttcctttgcagaccacagctgtgtcagcgatcacatacccaggctct 271

                                                                       
Query: 181 gtcctggattatctacggctttctaatcttgccaccgctggtcaattggcacgtggcttt 240
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 gtcctggattatctacggttttctaatcttgccaccgctggtcaattggcacgtggcttt 211

                     
Query: 241 ccggacatca 250
           ||||||||||
Sbjct: 210 ccggacatca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 652
Length adjustment: 9
Effective length of query: 243
Effective length of database: 643
Effective search space:   156249
Effective search space used:   156249
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)