Query= MSMg01no380_f22.b1 MSMg01no380_f22.b1 CHROMAT_FILE:
MSMg01no380_f22.b1 PHD_FILE: MSMg01no380_f22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:25 2005
(489 letters)
>mm_chr12_37203762_37204650
Length = 889
Score = 888 bits (459), Expect = 0.0
Identities = 482/493 (97%), Gaps = 7/493 (1%)
Strand = Plus / Plus
Query: 4 ggaattctctctgtgctctgcaggctctatggttccagtcagagttctcaagctcagccg 63
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 ggaattctctctgtgttctgcaggctctatggttccagtcagagttctcaagctcagccg 256
Query: 64 catcctggatgtgtaggagatccttggatctcaggagggtttagtgcgttgtctggtagt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 catcctggatgtgtaggagatccttggatctcaggagggtttagtgcgttgtctggtagt 316
Query: 124 acccaaagccacacacaccactgaggtgcc-----ag--caacactgccccctctccttt 176
|||||||||||||||||||||||||||||| || | |||||||||||||||||||
Sbjct: 317 acccaaagccacacacaccactgaggtgccccctcagtgccacactgccccctctccttt 376
Query: 177 acaccatgtctgtggccatgaaaattatctcatgaaactgtcaaatgtcacaggggataa 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 acaccatgtctgtggccatgaaaattatctcatgaaactgtcaaatgtcacaggggataa 436
Query: 237 agttgtctcggattgagaactcccttttaaacatccgattttagtagtgagacaaggggt 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 agttgtctcggattgagaactcccttttaaacatccgattttagtagtgagacaaggggt 496
Query: 297 gttccctctgtcctcgggacaacaggaagctggtgactgttcttttccaaattagactct 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gttccctctgtcctcgggacaacaggaagctggtgactgttcttttccaaattagactct 556
Query: 357 gagcaaaatgataacgctcaagtttcaggtgagaagtaaagttttaaattcagtctcttg 416
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 557 gagcaaaatgataacgctcaagtttcgggtgagaagtaaagttttaaattcagtctcttg 616
Query: 417 ctggggtgggtagcccttgacccagatgcgtagcttccttttagagttgtaggcaagcag 476
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 617 ctggggtgggtagcccttgacccagatgtgtagcttccttttagagttgtaggcaagcag 676
Query: 477 ttggctcgcatgt 489
|||||||||||||
Sbjct: 677 ttggctcgcatgt 689
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space: 421041
Effective search space used: 421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no380_f22.g1 MSMg01no380_f22.g1 CHROMAT_FILE:
MSMg01no380_f22.g1 PHD_FILE: MSMg01no380_f22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:25 2005
(542 letters)
>mm_chr12_37370555_37371495
Length = 941
Score = 1025 bits (530), Expect = 0.0
Identities = 539/542 (99%), Gaps = 1/542 (0%)
Strand = Plus / Minus
Query: 1 caaaattttgtattcttaataatttcaatttgaaagaaccatattttatatgaaaaagtt 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 caaagttttgtattcttaataatttcaatttgaaagaaccatattttatatgaaaaagtt 682
Query: 61 acttcttttaaaaataaaagttctatgttatattatagatattttttatgaaaagacttc 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 681 acttcttttaaaaataaaagttctatgttatattatagata-tttttatgaaaagacttc 623
Query: 121 tgaaatatatggtattctagatataaatattaataagcctttcatattttaatctacttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tgaaatatatggtattctagatataaatattaataagcctttcatattttaatctacttt 563
Query: 181 tggtcagacaactgccccataatatttcccacatcttaatgaaaaggaaaatctgtgata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tggtcagacaactgccccataatatttcccacatcttaatgaaaaggaaaatctgtgata 503
Query: 241 catttcttcccatgtcttatatttacttactaatattttcaacttctttcaagatcctca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 catttcttcccatgtcttatatttacttactaatattttcaacttctttcaagatcctca 443
Query: 301 cagattattcaaatacaacatttataaattaagtataaaggtataataaatctctgaaga 360
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 442 cagattattcaaatacaacatttataaattaagtatagaggtataataaatctctgaaga 383
Query: 361 ataatgtataattgaaattctatcctgtgttaaattttaatgaggtctcaactaccttta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ataatgtataattgaaattctatcctgtgttaaattttaatgaggtctcaactaccttta 323
Query: 421 gatttgtggtatatttacacattatcaagtcaacagagcaaagaacaatgaatcagcaca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gatttgtggtatatttacacattatcaagtcaacagagcaaagaacaatgaatcagcaca 263
Query: 481 ctagctcacctaccgctcagtttcctcttatccacaaaaggggtcataccattttactac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ctagctcacctaccgctcagtttcctcttatccacaaaaggggtcataccattttactac 203
Query: 541 ag 542
||
Sbjct: 202 ag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 941
Length adjustment: 10
Effective length of query: 532
Effective length of database: 931
Effective search space: 495292
Effective search space used: 495292
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
