BAC Information

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BAC

Clone NameMSMg01-380H08
Chromosome12 (Build37)
Map Location 59,061,133 - 59,061,628
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc25a21, AU021838, LOC100040044, Foxa1, 4921506M07Rik, EG217600, BC042761
Downstream geneSstr1, Clec14a, LOC100040183, Sec23a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-380H08.T7 (MSMg01no380_h08.b1)MSMg01-380H08.TJ (MSMg01no380_h08.g1)
ACCAG484829AG484830
length765775
length of high quality
(start - end)
517 (26 - 542)531 (65 - 595)
definitionCHROMAT_FILE: MSMg01no380_h08.b1 PHD_FILE: MSMg01no380_h08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:32 2005CHROMAT_FILE: MSMg01no380_h08.g1 PHD_FILE: MSMg01no380_h08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGTCGCTATACGACTCACTATATCCAGAGGATCCGCGGAATTCTTTGTTC
TGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGAAGTCCAC
CTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGATTTAG
GATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCCTATTG
ACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCCCATTT
GTCAATTCTCGATCTTACAGAGCAAGCCATTGCTGTTCTGTTCAGGAATC
TTTCCCCTGTACCCATATCTTCAAGGCTTTTCCCCACTTTCTCCTCTATA
AGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACTTAGATTT
GACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCATTCTTCTACATG
ATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGTCTTTCTTC
CACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCATAGGTGTG
TGGGTTCATTTCTGGGTCTTCCATTCTATTCCATTGGTCTACTTGTCTGT
CTCTATACCAGTATCATGCAGCTTTTATCACAATTTTCTTGTTATAAAGC
TTTTAGTCATGCCCGGTTGTATTCCCCACAGGTTCTTTTATTCTTGGAAA
TAAGTTTTGGTTTTCTAGCGTTTTTTTTATTCCCCATTCATTTCTCTCTT
GCTCCTTTTTTTTCT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCCTTGCAGGGGTCATTCTCCAAAACAGGTGAATCAT
AGATCTTTTAGGGGCAGAAAACGGGCACCGTGTCACTTTACCCAGGAAGA
ATGCTGTTTCTACATCAACCAATCAGGAATCATCTGAGTTGCCGTAGAAA
AACTCCAAGACTGGCATGGGACTTGCACAAGTATTTAGAAACAAAAGGAG
TTGAACAGAGTCCACAGTAAGACAACAGCTACATTAACGGCCCCCTGCAG
TGTCCCTTCATCTTGGGCCTCATTTGACTCACTATCGCCCCCTGCCGAAA
GAACCGCTTTTCCAGAGCAGTTTGAAGGCAATCACAAGATCCACTGCAAT
CAATCAAGCCAAAACTCAACTCTGTCTACATGAAGTCAATCTGACCCCTG
CCGCCTTAAGTCCTGGGAACAGCCCACTTCCTTCTTTTTATGCTTTCTGG
GTCTGGAATAAAGCACTAGTAACGAAAGCCTCAGATGAGATGAGGAACTC
TGGACAGAAAGGTCACCACACTGATCACATCCGAGGGAAGTTAGGAACTG
GGGAGCTTCTAATAAGAGCGATATATGAACGTCTATGGGTCTATACAACT
AGAGACTGTACCGGAAAAGATTTGAGATGGACCATTCCACCTCCTCTTTG
TTTCGCATCGGTTTAAAACCCTGATCACCCCTTCCCCGGAAACCCCCCTC
CCAGAAGGTCCTGGCCCTTCCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no380_h08.g1 MSMg01no380_h08.g1 CHROMAT_FILE:
MSMg01no380_h08.g1 PHD_FILE: MSMg01no380_h08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:32 2005
         (531 letters)



>mm_chr12_59061133_59062063
          Length = 931

 Score =  758 bits (392), Expect = 0.0
 Identities = 476/534 (89%), Gaps = 48/534 (8%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccttgcaggggtcattctccaaaacaggtgaatcatagatcttttaggggcagaaaacgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ccttgcaggggtcattctccaaaacaggtgaatcatagatcttttaggggcagaaaacgg 437

                                                                       
Query: 61  gcaccgtgtcactttacccaggaagaatgctgtttctacatcaaccaatcaggaatcatc 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gcaccatgtcactttacccaggaagaatgctgtttctacatcaaccaatcaggaatcatc 377

                                                                       
Query: 121 tgagttgccgtagaaaaactccaagactggcatgggacttgcacaagtatttagaaacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tgagttgccgtagaaaaactccaagactggcatgggacttgcacaagtatttagaaacaa 317

                                                                       
Query: 181 aaggagttgaacagagtccacagtaagacaacagctacattaacggccccctgcagtgtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 aaggagttgaacagagtccacagtaagacaacagctacattaacggccccctgcagtgtc 257

                                                                       
Query: 241 ccttcatcttgggcctcatttgactcactatcgccccctgccgaaagaaccgcttt---- 296
           || |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
Sbjct: 256 ccatcatcttgggtctcatttgactcactatcgccccctgccgaaagaaccgctttcaaa 197

                                                                       
Query: 297 ------tccagagcagtttgaaggcaatcacaagatccactgcaatcaatcaagccaaaa 350
                 ||||||||||||||           |||||||||||| ||||||||||||||||
Sbjct: 196 tgattctccagagcagtttg-----------aagatccactgctatcaatcaagccaaaa 148

                                                                       
Query: 351 ctcaactctgtctacatgaagtcaatctgacccctgccgccttaagtcctgggaacagcc 410
           |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct: 147 ctcaactctgtctacatgaagtcaatctgacctctgccgccttaaatcctgggaacagcc 88

                                                                       
Query: 411 cacttccttctttttatgctttctgggtctggaataaagcactagtaacgaaagcctcag 470
           || ||||||||||||||||| ||||||||||||||||||||||||               
Sbjct: 87  cagttccttctttttatgctctctgggtctggaataaagcactag--------------- 43

                                                                 
Query: 471 atgagatgaggaactctggacagaaaggtcaccacactgatcacatccgaggga 524
                       ||| ||||||||||||||||||||||||||| ||||||||||
Sbjct: 42  ------------actttggacagaaaggtcaccacactgatcatatccgaggga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space:   479841
Effective search space used:   479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)