BAC Information

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BAC

Clone NameMSMg01-380N14
Chromosome12 (Build37)
Map Location 37,249,460 - 37,249,987
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043575, LOC629758, LOC100043579, LOC669866, Agr3, Agr2, Tspan13, EG432649, Bzw2, Ankmy2, 1700108M19Rik, Sostdc1, 4930579E17Rik
Downstream geneLOC638858, Meox2, A530016O06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-380N14.T7 (MSMg01no380_n14.b1)MSMg01-380N14.TJ (MSMg01no380_n14.g1)
ACCAG485128AG485129
length757751
length of high quality
(start - end)
527 (37 - 563)528 (67 - 594)
definitionCHROMAT_FILE: MSMg01no380_n14.b1 PHD_FILE: MSMg01no380_n14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:02 2005CHROMAT_FILE: MSMg01no380_n14.g1 PHD_FILE: MSMg01no380_n14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTCA
CCTGTCCGGAGAGAGAACTTATACAGCCCACGTCCAGCAGGAAGACAGGG
CATCAAGTGAGGGAGGAGGTTGTGATCCCACGGTCAAAACTGATCCATAA
TTGTTTCTGTCTGAAAGAATTATAGGGATGGAAGTGGAGAGGAGCCTGAG
GAAAAGAAGGTCCAGTGACAGGACCAAAGTAGGATCCAGATCAAGGGGAG
GTTTCAAGGCCTGACACTATTACTGAAGCTATAGAGTGCTCACAAAAAAG
GGGGCCTATTATGTCTGTCCCCCGAAAGACCCAACAAGCAGCTGAAAGAG
TCAGATGCAGATATTTGCACCCAACCAATGGACAGAAGCTGCTGACCCCT
GTTGTTGAATTAGGGAAAGGCTGGAAGAAGCTGAGAAGGAGGGCAACCCT
GTAGGAGGACCAGCAGACTCAACCTGCATCCCTGAGATCTCTCAAACCAA
CCAGGCAGTATACACCAGCTGATATGAGGCTCCCAACACATATACAGCAG
TGGGGTCTGGCTTCAATAAGAGATGATGCACCTAACCCTCAAGAGACTGG
AAGCCCAGGGAGTTTAGAGTTTAGAGGTCATGTGGGAATGGGGTCAGTTG
GTCGGCGATTTCCTTTTCTCTTTCCTCCCTTTCTCCCTTTCCTCCTTTCC
TTTTCACCCTTCTTCTCCTTTACCTCTTCCCCCTTCTTCCCTCCCTTTCT
TCTCCTC
GTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXACTGAGGAGAAAGATCAGAGTCCATGCTGGCCTA
ACTAGCTAAGAAATGGGGCCTGAAATCTATAACACTTTTTATCCCTTGGA
GAGGGCATCCAGACAGTCTCAGAAATACCTAGTTCTGTAAATTCAAGCCT
ATTGTGTAGTATGGGAGTTTAATTCTTTTTAGGTAATTGGTAACATAGGT
AAGATTTTAACATAAAACAAAGACAAAACTTTGTATTAAACAAAACTCTA
ATGTGATCAATGACAGAACAAGCAAGTTGGGTAGAGTGGAATTTAGTTCA
TTCACTGGCCAAGTGTATTTGATTATGTGCCCTAAAGATAGGTTCTAAGG
TGCAGCTACTATGGAAACTTATCACGTGAGTGATTTCCTGAGCAACAGGG
TGTCATTGAATGTTTTAGGAAGGTTATGGAGTCAACTCAGTGGTGGAACA
CTGCAGTGCTTTGAGGGTGGAAGGACATATTTGAAGTCCTGGACTGAGCC
CTCCATTCCACATTTCTTTGTACAGAGATCTTCATTTTATCTTCACAGGT
GAGATGCCAAGTCTCACCTATTCAGGCTAGTAAGACGAAGACACCGATGT
CTTTGTTCCTTTCTTAAGATGCTTAACCTTGCGCTCCATTTTCTTGAAGG
GAAAACTGAACTTAACTCTAGGTTGGGGAGATAACCACGAATCCCTGCCC
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no380_n14.g1 MSMg01no380_n14.g1 CHROMAT_FILE:
MSMg01no380_n14.g1 PHD_FILE: MSMg01no380_n14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:02 2005
         (528 letters)



>mm_chr12_37249260_37250187
          Length = 928

 Score = 1006 bits (520), Expect = 0.0
 Identities = 526/528 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgaggagaaagatcagagtccatgctggcctaactagctaagaaatggggcctgaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgaggagaaagatcagagtccatgctggcctaactagctaagaaatggggcctgaaat 260

                                                                       
Query: 61  ctataacactttttatcccttggagagggcatccagacagtctcagaaatacctagttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctataacactttttatcccttggagagggcatccagacagtctcagaaatacctagttct 320

                                                                       
Query: 121 gtaaattcaagcctattgtgtagtatgggagtttaattctttttaggtaattggtaacat 180
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 321 gtaaattcaagcctattgtgtagtatgggagcttaattctttttaggtaattggtaacat 380

                                                                       
Query: 181 aggtaagattttaacataaaacaaagacaaaactttgtattaaacaaaactctaatgtga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggtaagattttaacataaaacaaagacaaaactttgtattaaacaaaactctaatgtga 440

                                                                       
Query: 241 tcaatgacagaacaagcaagttgggtagagtggaatttagttcattcactggccaagtgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcaatgacagaacaagcaagttgggtagagtggaatttagttcattcactggccaagtgt 500

                                                                       
Query: 301 atttgattatgtgccctaaagataggttctaaggtgcagctactatggaaacttatcacg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atttgattatgtgccctaaagataggttctaaggtgcagctactatggaaacttatcacg 560

                                                                       
Query: 361 tgagtgatttcctgagcaacagggtgtcattgaatgttttaggaaggttatggagtcaac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgagtgatttcctgagcaacagggtgtcattgaatgttttaggaaggttatggagtcaac 620

                                                                       
Query: 421 tcagtggtggaacactgcagtgctttgagggtggaaggacatatttgaagtcctggactg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 621 tcagtggtggaacactgcagtgctttgagggtggaaggacatatttgaagtcctggattg 680

                                                           
Query: 481 agccctccattccacatttctttgtacagagatcttcattttatcttc 528
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agccctccattccacatttctttgtacagagatcttcattttatcttc 728


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 928
Length adjustment: 10
Effective length of query: 518
Effective length of database: 918
Effective search space:   475524
Effective search space used:   475524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)