BAC Information

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BAC

Clone NameMSMg01-382H20
Chromosome12 (Build37)
Map Location 70,779,259 - 70,779,756
singlet/doubletsinglet
Overlap geneSos2, LOC100040879
Upstream geneLOC100040696, LOC665967, LOC665973, Rps29, Ppil5, Rpl36al, Mgat2, 1110034A24Rik, 9330151L19Rik, Pole2, Klhdc1, Klhdc2, Sdccag1, Arf6, LOC100040856, LOC100040862, Gm71
Downstream geneL2hgdh, Atp5s, Cdkl1, Map4k5, Spg3a, EG622339, Sav1, LOC100040999, Nin, ENSMUSG00000056391, Gm804, Pygl, Trim9, Txndc1, LOC100040965, LOC100041061
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-382H20.T7 (MSMg01no382_h20.b1)MSMg01-382H20.TJ (MSMg01no382_h20.g1)
ACCAG486381AG486382
length760677
length of high quality
(start - end)		505 (35 - 539)---
definitionCHROMAT_FILE: MSMg01no382_h20.b1 PHD_FILE: MSMg01no382_h20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:15 2005CHROMAT_FILE: MSMg01no382_h20.g1 PHD_FILE: MSMg01no382_h20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTAAATA
ATATCTAAGAGTTAGCTTTGGCTATCCTTTTCATTAGATACAAATTATTT
GCATTCTAACCAGCCAGAATTCTATAAATTCATCTTATAGACTTGGTAAA
TAAATTAGTTAATAGAACGTAATCAAAAGTTTAAACTAAGTACCACACTG
AAAAGTGCCTACTATTTTGTTTTTGCTTATTTTCAAGTGTTGGGTAATTT
TCTTAAATTAAATGAACACAGTGTGCATGTGTTTGTGTGAGTTTAGCAAA
ATTACTAGTGTCAACTTGAAAATGAAAGGCTTGTTCATTTCTGCAGCACT
TACACTAAAATTGGAACAATACATAAAATGAATGAGTTTAATTTGATTTA
ATGGAAGTTGTTTTAAAAACTAAAACAAAACAAAATGCTGGGTGTGGTGG
CACACTTTAATCCCAACACCTTGGAGGCAGCAGCAGGCAGATCTCTGTGG
GTTTGAGACCAGCCTGGTCTACATAGCAAGTTCCAGGCCAGCCAGAGCTA
CATAATGAGACCCTGTCACAAACCAAACAACAGTGAGAGAGGTGGTAAAT
CTTTCTTCTTTTCTTCTCCTTTCCAACTTTCGTCCCCTTTACATCTTTCT
TTCTGCCTCACTCTCTTTTTTTCTAATCTTCCCTTCTTTCTTATTCATAT
CTTCACCACTTTTTCCTAGTATATTTCATCCTTTCACCTATCTATCTTCA
TCTTTTAATA

GGGCCNNNGGGNNNNNNNNNNNCCGATGAXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAT
TTCTCCTCTTTTTGACTGGAGTTTCTCCCTCCGCTCAGCCTGGCACTGCA
GGTTGACCCTGGGATTGGCCAGCCAGACTCCAGGCCCCCAAACTTAAATA
AAAAACTCAAGGATTCACGGTTTCTGGTTTTTCCAAGGGGCCTTTCCCCG
CCCTCTCGGTTAAAGGGGGTTTCCTTGGAAAAAAAAAGTTTTGGCCCCAA
CAAAGGGGGAAAAAAAAATACCGCTCTTAAAGGAGGCCCCCCCCCCCCCC
CCCCCCCNTATATTTTTTTTAGGGGGGGAAAAAAAAAACCTTTCTTGGTG
TGGTTCCTTTATTAAAAAAAAAAAAAAAANAGGCGGGGGGAAGAAAAAAT
TTTTTTTTTTTTTGTTTGCCAAAAAAGGGGGGGAAAATAANNNTTTTTTT
TTCTCCCCCTCTCCNCCTCCCCCCCCCCCACCAACACAAAAAGGGGGGGT
GGGGGTTTATTTTTNATACCNTCTCTCTTTCCCTTCTTTNTCTTGGAGGN
NNTGGGGGGAAGAGCGGGCGCCCCTCCCCCCCCCACAATTTATTTTTTTT
TTTTTTTTTTTGAAAAGAAAAAAAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no382_h20.b1 MSMg01no382_h20.b1 CHROMAT_FILE:
MSMg01no382_h20.b1 PHD_FILE: MSMg01no382_h20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:15 2005
         (505 letters)



>mm_chr12_70779259_70780164
          Length = 906

 Score =  932 bits (482), Expect = 0.0
 Identities = 494/498 (99%), Gaps = 1/498 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctaaataatatc-taagagttagctttggctatccttttcattagatacaaatta 63
           ||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 gaattctaaataagaacataagagttagctttggctatccttttcattagatacaaatta 439

                                                                       
Query: 64  tttgcattctaaccagccagaattctataaattcatcttatagacttggtaaataaatta 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tttgcattctaaccagccagaattctataaattcatcttatagacttggtaaataaatta 379

                                                                       
Query: 124 gttaatagaacgtaatcaaaagtttaaactaagtaccacactgaaaagtgcctactattt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gttaatagaacgtaatcaaaagtttaaactaagtaccacactgaaaagtgcctactattt 319

                                                                       
Query: 184 tgtttttgcttattttcaagtgttgggtaattttcttaaattaaatgaacacagtgtgca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tgtttttgcttattttcaagtgttgggtaattttcttaaattaaatgaacacagtgtgca 259

                                                                       
Query: 244 tgtgtttgtgtgagtttagcaaaattactagtgtcaacttgaaaatgaaaggcttgttca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tgtgtttgtgtgagtttagcaaaattactagtgtcaacttgaaaatgaaaggcttgttca 199

                                                                       
Query: 304 tttctgcagcacttacactaaaattggaacaatacataaaatgaatgagtttaatttgat 363
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 198 tttctgcagcacttacactaaaattggaacaatacataaaatgagtgagtttaatttgat 139

                                                                       
Query: 364 ttaatggaagttgttttaaaaactaaaacaaaacaaaatgctgggtgtggtggcacactt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 ttaatggaagttgttttaaaaactaaaacaaaacaaaatgctgggtgtggtggcacactt 79

                                                                       
Query: 424 taatcccaacaccttggaggcagcagcaggcagatctctgtgggtttgagaccagcctgg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78  taatcccaacaccttggaggcagcagcaggcagatctctgtgggtttgagaccagcctgg 19

                             
Query: 484 tctacatagcaagttcca 501
           ||||||||||||||||||
Sbjct: 18  tctacatagcaagttcca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 906
Length adjustment: 10
Effective length of query: 495
Effective length of database: 896
Effective search space:   443520
Effective search space used:   443520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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