BAC Information

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BAC

Clone NameMSMg01-383G11
Chromosome12 (Build37)
Map Location 41,268,223 - 41,416,965
singlet/doubletdoublet
Overlap geneDock4
Upstream geneLOC100043148, Arl4a, LOC100043606, Scin, Gm889, Ifrd1, EG629820, Zfp277
Downstream geneLOC638487, LOC100043157, LOC100043162, Lrrn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-383G11.T7 (MSMg01no383_g11.b1)MSMg01-383G11.TJ (MSMg01no383_g11.g1)
ACCAG487081AG487082
length735746
length of high quality
(start - end)		548 (36 - 583)465 (72 - 536)
definitionCHROMAT_FILE: MSMg01no383_g11.b1 PHD_FILE: MSMg01no383_g11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:25:27 2005CHROMAT_FILE: MSMg01no383_g11.g1 PHD_FILE: MSMg01no383_g11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:25:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,416,422 - 41,416,965)(41,268,223 - 41,268,687)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACAAT
CATGAAGTGGAAAAGTCAACTGAGTGAAAGGACTGGCTACAAGACACAAG
CTCTGCTCCAAACAGTTAGGCTTCCCCACATACTACAACTCTTCACTACA
GAACAACTAAGCTATGAAAACAGACTAGGCTCTCTCCCAAGTTCCACAAG
TTTCCCAGTAGCCATATATTAAGTAAGTACCCCTTTAATCTAGCCTTGGT
GATTCATACCCTCGATCTGAGCACTGAGGAAGTGGAGGTAAGAGGATGAG
GAAGAAACTCAAGGTTGTTCTTAGCTATGAAGCAAGTGTATAATTTCAGC
AAACAAACTAAAATAAAAAGACAACACATGGTGCCAGCAGCTGGGCCACA
AGAAGCAGCTCCACAGAAACATCATGACATTTCTATTTATTTTGTCATCA
TAGAGATTGTTGATGTTATTTTTACAGTGGTTCTTAGTTACTGTGACCTT
ACAACCAGACACTGAATAAATCAGAACACTATCAACAGAATATCATCAGA
ACACTATCAACAGAATGGGTAAAAAATTGCTCATCACTACAAAGGGAAGT
TTTGACAAATATTTACATACTGATGGTAAAAAAAAAAAGAACAGGANAAA
ACTGAAGGCTGGCTGAAGGTAAGTGGAGCTAGTACCGGGAATGGGGGAAA
CCCCAAAACTTCTGGAAAGGAAAAAAAATTTCCCT

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTGTTTTGAAAATATGTATCAGAATTTAA
CTTATGCAATCATTCCGGAGAAACAAAACCTAATCATTTTCCCATACATT
TAAATTAATAAATTTAAAACTATAAAAAAATCATAGTTTCCCTACAGAAA
TGAGGTTAGTAGTATGTTAATGGCTTCAGATATCAACAAATGCATTTATA
AATGTGAGAGTGGCTAGTTGTTTCTCCTGTCATGTCCATTTAGCTATTTA
TCTTATTATATGTGTTTTTCCTTATATATGCATATTATAGAATTTCTGGA
TCAACAACATGTTTTTTATATTGCTTATTTTGTTTTTATAGGGTATGTTG
TAGTTTTTTTTCTCTGTATATTTGGTTAGCTAAAAGGAAATTTCCTTTTG
AATGATGTATGTATGTAATAAAATCTGGGAACCTAAGAGAAAACTCAATT
TTTTCATTATCTCAGTCAATCGATTGACCAACTTAGTGAGTGCCTACTGT
ATGCAAGGAGAGCTACTAAGTGGGAGTGGAGACACAACATTACCCTTTCC
TGGACTTAATGGGAATTCCAATGAAATGTTAGGGACAGACATTCTTTGAA
TAAACCAAAAAATGGTTTATTATCAATTGTGTTAAGGCACACAAAAATCC
ATTTCCTCTTTTATAAAGAAAAAAAGACCGTATTGAGAATAAACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no383_g11.b1 MSMg01no383_g11.b1 CHROMAT_FILE:
MSMg01no383_g11.b1 PHD_FILE: MSMg01no383_g11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:27 2005
         (548 letters)



>mm_chr12_41416218_41417165
          Length = 948

 Score =  959 bits (496), Expect = 0.0
 Identities = 532/544 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacaatcatgaagtggaaaagtcaactgagtgaaaggactggctacaagacacaa 64
           ||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 748 gaattcacaatcaagaagtggaaaagtcaactgaatggaaggactggctacaagacacaa 689

                                                                       
Query: 65  gctctgctccaaacagttaggcttccccacatactacaactcttcactacagaacaacta 124
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 gccctgctccaaacagttaggcttccccacatactacaactcttcactacagaacaacta 629

                                                                       
Query: 125 agctatgaaaacagactaggctctctcccaagttccacaagtttcccagtagccatatat 184
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 628 agctatgaaaacagactaggctctctcccaagttccacaagtttcccactagccatatat 569

                                                                       
Query: 185 taagtaagtacccctttaatctagccttggtgattcataccctcgatctgagcactgagg 244
           ||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct: 568 taagtaagtacgcctttaatctagccttggtgatccataccctcgatccgagcactgagg 509

                                                                       
Query: 245 aagtggaggtaagaggatgaggaagaaactcaaggttgttcttagctatgaagcaagtgt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 aagtggaggtaagaggatgaggaagaaactcaaggttgttcttagctatgaagcaagtgt 449

                                                                       
Query: 305 ataatttcagcaaacaaactaaaataaaaagacaacacatggtgccagcagctgggccac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ataatttcagcaaacaaactaaaataaaaagacaacacatggtgccagcagctgggccac 389

                                                                       
Query: 365 aagaagcagctccacagaaacatcatgacatttctatttattttgtcatcatagagattg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 aagaagcagctccacagaaacatcatgacatttctatttattttgtcatcatagagattg 329

                                                                       
Query: 425 ttgatgttatttttacagtggttcttagttactgtgaccttacaaccagacactgaataa 484
           ||||||||||||||| |||||| |||||||||||||||| |||||||| |||||||||||
Sbjct: 328 ttgatgttatttttatagtggtccttagttactgtgaccctacaaccacacactgaataa 269

                                                                       
Query: 485 atcagaacactatcaacagaatatcatcagaacactatcaacagaatgggtaaaaaattg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 atcagaacactatcaacagaatatcatcagaacactatcaacagaatgggtaaaaaattg 209

               
Query: 545 ctca 548
           ||||
Sbjct: 208 ctca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space:   504644
Effective search space used:   504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no383_g11.g1 MSMg01no383_g11.g1 CHROMAT_FILE:
MSMg01no383_g11.g1 PHD_FILE: MSMg01no383_g11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:27 2005
         (465 letters)



>mm_chr12_41268023_41268887
          Length = 865

 Score =  876 bits (453), Expect = 0.0
 Identities = 462/465 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgttttgaaaatatgtatcagaatttaacttatgcaatcattccggagaaacaaaacct 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgttttgaaaatatatatcagaatttaacttatgcaatcattccggagaaacaaaacct 260

                                                                       
Query: 61  aatcattttcccatacatttaaattaataaatttaaaactataaaaaaatcatagtttcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatcattttcccatacatttaaattaataaatttaaaactataaaaaaatcatagtttcc 320

                                                                       
Query: 121 ctacagaaatgaggttagtagtatgttaatggcttcagatatcaacaaatgcatttataa 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 ctacagaaatgaggttagtagtatgttaatggtttcagatatcaacaaatgcatttataa 380

                                                                       
Query: 181 atgtgagagtggctagttgtttctcctgtcatgtccatttagctatttatcttattatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgtgagagtggctagttgtttctcctgtcatgtccatttagctatttatcttattatat 440

                                                                       
Query: 241 gtgtttttccttatatatgcatattatagaatttctggatcaacaacatgttttttatat 300
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 441 gtgtttttccttatatatgcatattatagactttctggatcaacaacatgttttttatat 500

                                                                       
Query: 301 tgcttattttgtttttatagggtatgttgtagttttttttctctgtatatttggttagct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgcttattttgtttttatagggtatgttgtagttttttttctctgtatatttggttagct 560

                                                                       
Query: 361 aaaaggaaatttccttttgaatgatgtatgtatgtaataaaatctgggaacctaagagaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaaggaaatttccttttgaatgatgtatgtatgtaataaaatctgggaacctaagagaa 620

                                                        
Query: 421 aactcaattttttcattatctcagtcaatcgattgaccaacttag 465
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aactcaattttttcattatctcagtcaatcgattgaccaacttag 665


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 865
Length adjustment: 10
Effective length of query: 455
Effective length of database: 855
Effective search space:   389025
Effective search space used:   389025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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