BAC Information

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BAC

Clone NameMSMg01-383J08
Chromosome12 (Build37)
Map Location 10,604,532 - 10,604,708
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC382567, Nt5c1b, Rdh14
Downstream geneLOC238074, LOC100042308, EG668435, Kcns3, LOC628276, Msgn1, 5830483C08Rik, Smc6, Vsnl1, EG209550
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-383J08.T7 (MSMg01no383_j08.b1)MSMg01-383J08.TJ (MSMg01no383_j08.g1)
ACCAG487219AG487220
length763769
length of high quality
(start - end)		177 (36 - 212)436 (68 - 503)
definitionCHROMAT_FILE: MSMg01no383_j08.b1 PHD_FILE: MSMg01no383_j08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:25:40 2005CHROMAT_FILE: MSMg01no383_j08.g1 PHD_FILE: MSMg01no383_j08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:25:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCTAG
CCTTATCACAATGGCAATTTGGGTCAGATGTTTTCTTGAAATGGACTGCA
TTGCAAGCACAGGGTGCAGAGAGAATCCTGGCTCTGCTGAAATACATAGT
GTACTGATGGCTTCTTCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCNNNCCNCCCNCCCCNCCCCCCNCCCNNCCCCCCTTCTTT
TCTTCTTCCTCTCCTTCCCCCTCCTCCTTTTCTCCCTCCCTTCCCTTTCC
CCACCCCCTCTTTTTTTTTTTTTTCCNNCCTCCCCCCCTCTCCCTTTTTC
CTTCTTTTTTTTCCCTCCCCCCTCCTTTTTTCCTTTCTCTTCCTCTTTCT
CCTTTTTTCTCCCCTTTTTCTCTCTTTCTTCTTCTCCCCTTTCCTTCTTT
CCTCTCCCCTTTTTCCTTTCTTCTTTTCCCCTCTCTTCTNTTTTTCTTTT
CCCCTTTTCCCGTTTTTCTCCGTCCTCGTTTCCCTTTCTTTTTCTTTCTT
TTCTCGTTTCTCCTTTCTTCTCGCCCTTCTTCCTCTCTCTTCTTCCTTTT
TCTTTTCTCTTCTTTTCTCCCCCCTATTCCTTCTTTTATCGCTCTCCCTT
CCCATTTCCCTCGTTTCGCATTCCCATACTGTCCCATCGTCCCGATTTTT
CCCGCATTATCGGCATCTCCACCCCCGTTTACTAACACGATCGTCCATCA
CTCCCACCTAAAT

GTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTTCTAGTATTTTTTGTCCAATTGGTTTTGTGG
ATAGATATTATTTAAATTTGGATTTTTCTTGAAATATCCTTTCTCCATCT
ATGATGGTTGAGAGTTTGGGTAAGCATAGAAGTCTAGATTGGCATCTGTA
GTTTATCGAGGTTGTAAGACATCTGCCCGGCCCCTTCCAGTTTTTAAAGT
CTCTGATGTGAAGTTGGGTGTAATTCTGATAAGTCTGCCTTCGTATGTTA
CCTGGCCTTTTCCTCTTGCTGCCTTTAGTATGCTTTCTTTGTTTCATAGA
TTTTATGTTTTGATTATTATATGGAGGGAGGATTTTCTTTTCTAGTCCTG
TCTAATTGGTGTTCTATAAGATTCTTGTGTGTTTATAGGCATATTTTTCT
TTAGGTTGGGAAAGTTTTCTTCTATGATTTTGTTGATGATATTTTCTAGG
CCTTTGATCTGGGAGTCTTCATCTTCCTCTATTATTCTTAGGTTAGGGCT
TTTCATGATATCCCCGATTTCCTAGATGTTTTGCGGCAGGAATTTGTAAA
TTTAACATTTTCTTTGACTGATATATCAATTTTCTCTATTGGATCTTTTA
CCCCTCGATAGTTTTTTTCTTTCACTTTCTCATATTCGGTTGGGGATGGT
TTGGTATGTTTCCTGTTTCTCTTTCTCTATGTCGCTATCCCTCATTGTAT
TCCCTCAGTTTGGGTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no383_j08.b1 MSMg01no383_j08.b1 CHROMAT_FILE:
MSMg01no383_j08.b1 PHD_FILE: MSMg01no383_j08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:40 2005
         (177 letters)



>mm_chr12_10604328_10604905
          Length = 578

 Score =  296 bits (153), Expect = 5e-85
 Identities = 170/177 (96%), Gaps = 5/177 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccctagccttatcac-aatggcaatttgggtcagatgttttcttgaaatggactg 63
           |||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccccagccttagcaccaatggcaatttgggtcagatgttttcttgaaatggactg 264

                                                                       
Query: 64  cattgcaagcacagggtgcagagagaatcctggctctgctgaaatacatagtgtactgat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cattgcaagcacagggtgcagagagaatcctggctctgctgaaatacatagtgtactgat 324

                                                                    
Query: 124 ggcttct---tcc-ttcctccctccctccctccctccctccctccctccctccctcc 176
           |||||||   ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggcttctccctcccttcctccctccctccctccctccctccctccctccctccctcc 381


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 177
Length of database: 578
Length adjustment: 8
Effective length of query: 169
Effective length of database: 570
Effective search space:    96330
Effective search space used:    96330
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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