BAC Information

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BAC

Clone NameMSMg01-384F05
Chromosome12 (Build37)
Map Location 16,283,014 - 16,439,692
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC217409, Trib2, LOC100043268, EG432636, LOC100043273
Downstream geneLpin1, Ntsr2, Greb1, E2f6, Rock2, Pqlc3, 2410004P03Rik, EG668514, Kcnf1, LOC100043299, Pdia6, Atp6v1c2, Nol10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-384F05.T7 (MSMg01no384_f05.b1)MSMg01-384F05.TJ (MSMg01no384_f05.g1)
ACCAG487789AG487790
length746742
length of high quality
(start - end)		505 (37 - 541)489 (67 - 555)
definitionCHROMAT_FILE: MSMg01no384_f05.b1 PHD_FILE: MSMg01no384_f05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:36 2005CHROMAT_FILE: MSMg01no384_f05.g1 PHD_FILE: MSMg01no384_f05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,283,014 - 16,283,514)(16,439,270 - 16,439,692)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGAG
AAAGCGGAAATTCCCAGGGTATGCATAGGTAGATTTCACTTTGCAGAGGC
CATCAGCATTGAAGGTCGTTGCAGCAATAGCTTCAGCTTCTCAGCTGCTT
CTTCTTGCAGCATCAAGAGAGCATCACAGAAATCCACCACTTATCAAAAT
GCAAAGAACAACTGATCGATCAAGGAAGGGGAACTGCGGTGCTTTAAGTG
CAAATGGCTCCAAAGGCTCAGAGGGAGTGGCACCATTTGAAGGTGTGACC
TGGTTGAAGTAGGTGTGGCATTGTTGGAGGAAGTGTGTCACTGGAGGCGG
GTTTTGTGGTTTCAGATGCTCAAGCAAGGCTCAACTTCACTCTTTCTTCC
TATTTCTTATGGATCCAGATGTAGAACTCTCAACTACTTGGCCAGCACCA
CGTCTGCCTACAGCCATGTTTGGCACCATGTTGATAATGGGCTAAACCTG
TGAACTATAAATCAACCTCAGTTAAATATTTTCCCTTATAAGATTGTTGT
AGTCAGTGTCTGGTCTTCAATAGAAACCCTAAGGCAAGCAGCCAGGCTAT
TTGTAATAGCTACAACATAACCTCTTACTTAGGGAAAATCATAAAAAAAG
GAGTGGAGGAGTTTTAAAAACCCAAAAAACAGGCAGGTTGTTTAAAGATG
CCTGTCTTTATGTATAACAGGAAGCTGCCCCAAAACATTGTCCCCG

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCCCTATGTATCTTCAGTGACAAGAGCTCTTGATC
ATAGGTAGGCATCAAAAGGTATTGGACTCAAGGCAACAGATCTTGTTTTT
CTGGGCAGGAGACTAAATTGTGGAATAAAGGTGGAGCTTAACTGAGGTCT
TGGGCAGAGACCATGACACCATGGAACAGGCTAGGTTTCTGAGGCAGGCA
AGTTCATGCTCTGATATAGCCCATCATTGGGTCCATCATAGTTGCTTTAT
TTCACTGGTCTCAGTTTCCCCAACTCTAAAACAAGATGGCCATTCTGACC
CTACAAAGATGCTGTGAAGTTCAAGTGATTTAAGGTCCCTACACACCAAA
CACTATAACAGGTACCCAATGGTAATATAACCACCTCTCTCACCCTCTGC
TGACCCTTTAGCTTCCTTAGGACATGGGCATCCTGATTTCAACGTTCCCT
GACCCACCTGTTTCTAAGCAGATGAAGGTGTGCAATTTTATGGGAATGCA
AAGTTCTTCCCATGTGCCTTCCCAAGAAACTCACCATTTCAGTGCATGTA
AGCACCATATATTCCCTTGAAGGGCCCTTTAATAACATCCTTCTGGCAAG
TATATTTAACGGAACAATGATTGGGTTGCCTCCACACGGCCTGATTATGT
TTCCAGGAATGGTTGTGTAATACTCCTCTTCCCCTCCCGCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no384_f05.b1 MSMg01no384_f05.b1 CHROMAT_FILE:
MSMg01no384_f05.b1 PHD_FILE: MSMg01no384_f05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:36 2005
         (505 letters)



>mm_chr12_16282810_16283714
          Length = 905

 Score =  969 bits (501), Expect = 0.0
 Identities = 501/501 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagagaaagcggaaattcccagggtatgcataggtagatttcactttgcagaggc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagagaaagcggaaattcccagggtatgcataggtagatttcactttgcagaggc 264

                                                                       
Query: 65  catcagcattgaaggtcgttgcagcaatagcttcagcttctcagctgcttcttcttgcag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 catcagcattgaaggtcgttgcagcaatagcttcagcttctcagctgcttcttcttgcag 324

                                                                       
Query: 125 catcaagagagcatcacagaaatccaccacttatcaaaatgcaaagaacaactgatcgat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 catcaagagagcatcacagaaatccaccacttatcaaaatgcaaagaacaactgatcgat 384

                                                                       
Query: 185 caaggaaggggaactgcggtgctttaagtgcaaatggctccaaaggctcagagggagtgg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 caaggaaggggaactgcggtgctttaagtgcaaatggctccaaaggctcagagggagtgg 444

                                                                       
Query: 245 caccatttgaaggtgtgacctggttgaagtaggtgtggcattgttggaggaagtgtgtca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caccatttgaaggtgtgacctggttgaagtaggtgtggcattgttggaggaagtgtgtca 504

                                                                       
Query: 305 ctggaggcgggttttgtggtttcagatgctcaagcaaggctcaacttcactctttcttcc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctggaggcgggttttgtggtttcagatgctcaagcaaggctcaacttcactctttcttcc 564

                                                                       
Query: 365 tatttcttatggatccagatgtagaactctcaactacttggccagcaccacgtctgccta 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tatttcttatggatccagatgtagaactctcaactacttggccagcaccacgtctgccta 624

                                                                       
Query: 425 cagccatgtttggcaccatgttgataatgggctaaacctgtgaactataaatcaacctca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cagccatgtttggcaccatgttgataatgggctaaacctgtgaactataaatcaacctca 684

                                
Query: 485 gttaaatattttcccttataa 505
           |||||||||||||||||||||
Sbjct: 685 gttaaatattttcccttataa 705


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space:   443025
Effective search space used:   443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no384_f05.g1 MSMg01no384_f05.g1 CHROMAT_FILE:
MSMg01no384_f05.g1 PHD_FILE: MSMg01no384_f05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:36 2005
         (489 letters)



>mm_chr12_16439270_16440158
          Length = 889

 Score =  818 bits (423), Expect = 0.0
 Identities = 423/423 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccctatgtatcttcagtgacaagagctcttgatcataggtaggcatcaaaaggtattgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ccctatgtatcttcagtgacaagagctcttgatcataggtaggcatcaaaaggtattgga 364

                                                                       
Query: 61  ctcaaggcaacagatcttgtttttctgggcaggagactaaattgtggaataaaggtggag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 ctcaaggcaacagatcttgtttttctgggcaggagactaaattgtggaataaaggtggag 304

                                                                       
Query: 121 cttaactgaggtcttgggcagagaccatgacaccatggaacaggctaggtttctgaggca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 cttaactgaggtcttgggcagagaccatgacaccatggaacaggctaggtttctgaggca 244

                                                                       
Query: 181 ggcaagttcatgctctgatatagcccatcattgggtccatcatagttgctttatttcact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 ggcaagttcatgctctgatatagcccatcattgggtccatcatagttgctttatttcact 184

                                                                       
Query: 241 ggtctcagtttccccaactctaaaacaagatggccattctgaccctacaaagatgctgtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 ggtctcagtttccccaactctaaaacaagatggccattctgaccctacaaagatgctgtg 124

                                                                       
Query: 301 aagttcaagtgatttaaggtccctacacaccaaacactataacaggtacccaatggtaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 aagttcaagtgatttaaggtccctacacaccaaacactataacaggtacccaatggtaat 64

                                                                       
Query: 361 ataaccacctctctcaccctctgctgaccctttagcttccttaggacatgggcatcctga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63  ataaccacctctctcaccctctgctgaccctttagcttccttaggacatgggcatcctga 4

              
Query: 421 ttt 423
           |||
Sbjct: 3   ttt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space:   421041
Effective search space used:   421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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