BAC Information

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BAC

Clone NameMSMg01-384N02
Chromosome12 (Build37)
Map Location 46,686,267 - 46,686,843
singlet/doubletsinglet
Overlap genenone
Upstream geneNrcam, EG620025, Stxbp6
Downstream geneLOC664952
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-384N02.T7 (MSMg01no384_n02.b1)MSMg01-384N02.TJ (MSMg01no384_n02.g1)
ACCAG488164AG488165
length751746
length of high quality
(start - end)
482 (24 - 505)577 (63 - 639)
definitionCHROMAT_FILE: MSMg01no384_n02.b1 PHD_FILE: MSMg01no384_n02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:12 2005CHROMAT_FILE: MSMg01no384_n02.g1 PHD_FILE: MSMg01no384_n02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCCGCTATACGACTCCTATATGGAGAGGATCCGCGGAATTCCTGATCTT
TCCAGAACTTTTATCATGAATGGGTGTTGGATCTTGTCAAATGCTTTTTC
TGCATCCAACGAGATGATCATGTGGTTTTTGTCTTTGAGTTTGTTTATAT
AGTGGATTACATTGATGGATTTTCATATATTAAACCATCCCTGCATTCCT
GGAATAAAACCTACTTGGTCAGGATGGATGATTGCTTTAATGTGATCTTG
GATTCGGTTAGCGAGAATTTTATTGAGGATTTTTGCATCGATATTCATAA
GAGAAATTGGTCTGAAGTTCTCTATCTTTGTTGGATCTTTCTGTGGTTTA
GGTATCAGAGTAATAGTGGCTTCATAAAATGAGTTGGGTAGAGTACTTTC
TACTTCTATCTTGTGAAAAAGTTTGTGCAGAACTGGAATTAGATCTTCTT
TGAAGGTCTGATAGAACTCTGCACTAAACCTGTCTGGTCCTGGGCTTTTT
TTGGCTGGGAGACTATTTATAACTGCTTCTATTTCTTTAGGGGATATGGG
ACTGTTTATAAGGTCAACTTGATCCCGATTCCAACTTTGGTACCTGTTAT
CTGTCCAGAAATTTGTCCATTTCGTCCAGCTTTTCCAGTTTTGTTGATTT
TACCTCTTTGTAAAATGCACTGCATTTGTTTTTTTATTTCTTCTAGTCCT
CCTCTTATTATCTCCTTTATTTTTTTTTAAATATATATTTTTTATTTTTT
N
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTGGTGATATAGTACAATTCCCCTTCAGCTCTGCTCTCA
TAAAATGCTAGCTTTAAAATGGTTTCCTCCTTGTAATGTTTCTCTATTCT
TTTCTCCATTAAATGAAGGCACATTTCAGAAAATTATTACAATTATCTGT
AGCTTGTGCATTTGAGCAAATAATCCATTGTCCCTCCTCAGATGGCAATA
CAAACAAAAAGCCCCAAGTAACATTAAATGTGTACATAGTTCAACACCTA
TATTTCCCAGTTAATTTTAGGAACATTTCTAACATATTTCCTACCTTGAT
TGATGGTTAATAAGGAGCCAGAAAGAATTAGTTGAATTTGACTTCATTTT
CCTTCTCATTTATAGTTGTTGATAGATAGCAAGAGAATGAAAGATGTCTG
ATTATGTTCAGGGAAAGTTACTGAGTTTCTCTAACATACCAGGGACAAAG
TTAAATAGTGTTTTTCACAGAGATGAGAAAACTTCCTGGTTGAATATGTG
GACACAAATGCAGAGAATAGAACACTGGAGGTGTAGGACATATGAGAAAA
GGGTTAGGGAAAGCATGGAAATGAGGCGACGCTGCCTGAGCAGAGCCATT
TAAGGATTATCAGGTATTTTCCAGATATAGACAGAAAAGTTTCTTTCCCG
CCAAGGGTACAGCATTAACAAAGGCGTGCATTAATAGAGTCTGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no384_n02.g1 MSMg01no384_n02.g1 CHROMAT_FILE:
MSMg01no384_n02.g1 PHD_FILE: MSMg01no384_n02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:12 2005
         (577 letters)



>mm_chr12_46686067_46687043
          Length = 977

 Score = 1100 bits (569), Expect = 0.0
 Identities = 575/577 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggtgatatagtacaattccccttcagctctgctctcataaaatgctagctttaaaatgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggtgatatagtacaattccccttcagctctgctctcataaaatgctagctttaaaatgg 260

                                                                       
Query: 61  tttcctccttgtaatgtttctctattcttttctccattaaatgaaggcacatttcagaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttcctccttgtaatgtttctctattcttttctccattaaatgaaggcacatttcagaaa 320

                                                                       
Query: 121 attattacaattatctgtagcttgtgcatttgagcaaataatccattgtccctcctcaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 attattacaattatctgtagcttgtgcatttgagcaaataatccattatccctcctcaga 380

                                                                       
Query: 181 tggcaatacaaacaaaaagccccaagtaacattaaatgtgtacatagttcaacacctata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggcaatacaaacaaaaagccccaagtaacattaaatgtgtacatagttcaacacctata 440

                                                                       
Query: 241 tttcccagttaattttaggaacatttctaacatatttcctaccttgattgatggttaata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttcccagttaattttaggaacatttctaacatatttcctaccttgattgatggttaata 500

                                                                       
Query: 301 aggagccagaaagaattagttgaatttgacttcattttccttctcatttatagttgttga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggagccagaaagaattagttgaatttgacttcattttccttctcatttatagttgttga 560

                                                                       
Query: 361 tagatagcaagagaatgaaagatgtctgattatgttcagggaaagttactgagtttctct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tagatagcaagagaatgaaagatgtctgattatgttcagggaaagttactgagtttctct 620

                                                                       
Query: 421 aacataccagggacaaagttaaatagtgtttttcacagagatgagaaaacttcctggttg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aacataccagggacaaagttaaatagtgtttttcacagagatgagaaaacttcctggttg 680

                                                                       
Query: 481 aatatgtggacacaaatgcagagaatagaacactggaggtgtaggacatatgagaaaagg 540
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 681 aatatgtggacacaaatgcagagaaaagaacactggaggtgtaggacatatgagaaaagg 740

                                                
Query: 541 gttagggaaagcatggaaatgaggcgacgctgcctga 577
           |||||||||||||||||||||||||||||||||||||
Sbjct: 741 gttagggaaagcatggaaatgaggcgacgctgcctga 777


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space:   548289
Effective search space used:   548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)