BAC Information

Click to search

BAC

Clone NameMSMg01-385D13
Chromosome12 (Build37)
Map Location 64,701,838 - 64,702,373
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040438, 1700047L15Rik, Tspyl-ps, EG665741, EG382606
Downstream geneLOC435302, EG623046
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-385D13.T7 (MSMg01no385_d13.b1)MSMg01-385D13.TJ (MSMg01no385_d13.g1)
ACCAG488472AG488473
length736735
length of high quality
(start - end)
580 (34 - 613)535 (60 - 594)
definitionCHROMAT_FILE: MSMg01no385_d13.b1 PHD_FILE: MSMg01no385_d13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:44 2005CHROMAT_FILE: MSMg01no385_d13.g1 PHD_FILE: MSMg01no385_d13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATAAAGA
TACCCTCTCTCCCACGCCCAGTAGTTGCAGATTTCCAGTTTCCTGACTGG
GTCTTTTTCTTGTATCTTCACACACCTAACCGAACCATTTCTCTTCTGCT
TCACCTCTCCTCATACCTTCTATGACTATCTTTTTTCCCTTCTAAGTGTG
ATTCAAGCATCCTAACTTGGGCCTTCCTACTTATATAACTTCTTTGGGTC
TGTGGGGTATATTGATAGTCTGTTCTCTATATCCATTTATTAATGAATAC
ATATGATGTATGTGTTTTGGGGTCTGGGTTACCTCACTTATGATAGTATT
TTCTAGTTCCATTGATTTGTCTGTAAAATTACTGACAGAGCTGAAAGGGA
TTGAAAGCCATAGGAAGAACACTATCAACTAACCAGGTCACCCAAAGCTC
CCCGAGACTAAACCACCAATCGAAGTATACATAGAGGGATCCATGGCTCC
AGCTACATATGTAGCAGAGGACAGCCATATCTGGCATCAATGGAAGGTGA
GCCCCTTGGTCCTGTGGAGGCTTGATGCCCCAGAGTAGTGGGATTCTAGA
GTAGTTAGGCAGGAGTGGATGAGTTGGTGGCTGGGTGGAGGAGACCCTCA
TAGAGCCAAGGGGTGTGGTAAGACAGGGCAAAGAATGCGGAAGTTGTGGA
GGGGTATTTGGAAAGGTGATTAAATTTGAAGCTACG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTGTGTCTAGCTCTGTACTACATTTTTAAATTAAGTTATTTG
GTTTTATGGTGTCTAACTTCTTGAGTTCTTTATATATTTTGGGTATTAGC
TGGCTGTCATATGTAGGGTTAGTGAAGATCTTTTCCCAGTCTGTAGGTTG
CCATTTGTTTTGTCCTATTGAGAGTGTCCTTTGCCTTACAGAAGCTATTC
ATGAGGTGCCATTTGTCAATTGTTGATCTTAAAGCCTGAACCATTAGTGT
TCTCTTCAGTAAATTTCCCTTGTGCCAATGTATTCTAGGCTCTTTGCTAC
TATTTCTTCTCTTAGATTAGTACTACTTAATCCCATACACCTTGAACCTG
AAAGGTATTTTGAGTATAAAACCATTCTACTGTAGCTGTCTTTTTAGAAC
ACATTCCCCCTTCTGACTTTTTTTATATAAAGAAGTTACTTTGAATTTAA
TTTTTGTCCCAAGTGTATTTGTTTTAAAGTAAATGACAAAAGAAATTAGC
TGACACCAAAAGGAATAACATTTTTTTCATGAATAACATATTGTTGGCTT
GATAGTCTCATTTGAATTAGGGATTCCAAAATAATTATTGTGATTATACG
GCTTTGCAAAATATGTTATGGCTATCCCCATTGGCTTGGAATTCATGGAT
TTTTTTCCTTGATCCTGAAACCTTAATTCCCCATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no385_d13.g1 MSMg01no385_d13.g1 CHROMAT_FILE:
MSMg01no385_d13.g1 PHD_FILE: MSMg01no385_d13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:44 2005
         (535 letters)



>mm_chr12_64701638_64702573
          Length = 936

 Score =  988 bits (511), Expect = 0.0
 Identities = 530/537 (98%), Gaps = 3/537 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtgtctagctctgtactacatttttaaattaagttatttggttttatggtgtctaactt 60
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 tgtgtctagctctgtactacattttttaattaagttatttggttttatggtgtctaactt 260

                                                                       
Query: 61  cttgagttctttatatattttgggtattagctggctgtcatatgtagggttagtgaagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttgagttctttatatattttgggtattagctggctgtcatatgtagggttagtgaagat 320

                                                                       
Query: 121 cttttcccagtctgtaggttgccatttgttttgtcctattgagagtgtcctttgccttac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttttcccagtctgtaggttgccatttgttttgtcctattgagagtgtcctttgccttac 380

                                                                       
Query: 181 agaagctattcatgaggtgccatttgtcaattgttgatcttaaagcctgaaccattagtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaagctattcatgaggtgccatttgtcaattgttgatcttaaagcctgaaccattagtg 440

                                                                       
Query: 241 ttctcttcagtaaatttcccttgtgccaatgtattctaggctctttgctactatttcttc 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 441 ttctcttcagtaaatttcccttgtgccaatgtattctaggctctttgctactttttcttc 500

                                                                       
Query: 301 tcttagattagtactacttaatcccatacaccttgaacctgaaaggtattttgagtataa 360
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 501 tcttagattagtactacttaatcccatacaccttgaacctgaaagatattttgagtataa 560

                                                                       
Query: 361 aaccattctactgtagctgtctttttagaacacattcccccttctgacttttttt--ata 418
           |||| ||||||||||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 561 aaccgttctactgtagctgtctttttagaacacattcccccttctgactttttttttata 620

                                                                       
Query: 419 taaagaagttactttgaatttaatttttgtcccaagtgtatttgttttaaagtaaatgac 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taaagaagttactttgaatttaatttttgtcccaagtgtatttgttttaaagtaaatgac 680

                                                                    
Query: 479 aaaagaaattagctgacaccaaaaggaataacatttttttcatgaataacatattgt 535
           ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 681 aaaagaaattagctgacaccaaaaggaataacatttttt-catgaataacatattgt 736


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 936
Length adjustment: 10
Effective length of query: 525
Effective length of database: 926
Effective search space:   486150
Effective search space used:   486150
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)