BAC Information

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BAC

Clone NameMSMg01-385L03
Chromosome12 (Build37)
Map Location 119,976,747 - 120,129,820
singlet/doubletdoublet
Overlap geneEG668615, LOC620665, Sp8, Abcb5
Upstream geneRapgef5, Cdca7l, Dnahc11, Sp4, LOC100042993, LOC668611
Downstream geneItgb8, EG627557, LOC100043011, 4732474O15Rik, LOC668632, LOC668633
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-385L03.T7 (MSMg01no385_l03.b1)MSMg01-385L03.TJ (MSMg01no385_l03.g1)
ACCAG488835AG488836
length759762
length of high quality
(start - end)		540 (23 - 562)534 (58 - 591)
definitionCHROMAT_FILE: MSMg01no385_l03.b1 PHD_FILE: MSMg01no385_l03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:20 2005CHROMAT_FILE: MSMg01no385_l03.g1 PHD_FILE: MSMg01no385_l03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,976,747 - 119,977,280)(120,129,496 - 120,129,820)
sequence
AATACACTCCTATATCGAGAGATCCGCGGAATTCCTCCATATACTGAGTC
AGTTCCTTTCCTTGATGTAGTGGGAAATGTAAGCCAAATGAACACTTTTT
TCCCAAAGTTGCTTCTGGTCAGAATGTTCTACCACAGCAACTGATGAGTA
TACACATACTGAAATAAAAACAGCTAAATGGAAAATCGTTACTTTGTTCC
AATAGTGAACAATTGTTACTTGTACAGTTTCACTCTGGGAGGGAAATGAC
CATGGGTAAGTCTAGAAAGCTCTGAAAGCAATTGCTTTTTAGGGCCCAGT
CCTGTTGCCTTTTTACACAAGAAAAAGCAAGGTATTCCTTTTCTTTCTTT
GAGAAAACAAATTAGCATTGATTATGCCACAGCTGTATTCAAATACCTGT
TCCTGTTCTGAGGCCCGAACATACTGAAAGATTTATTCAGTTTGTTGTTT
TTAAGAATATAACCTCACAAAGTCATTATGTATTTACTTGGGATCTTTCT
TAGCTTGATTTATCACTCCATATCACTTTTAAATTCTGGAAAAGGACCAA
TTGTTTTTCACAACTTCACAGTATGAAAGTGAATTTCCACTTAAACACAT
TATTCCCTATCTTTTTAACTGGAAAGTTATTCTGTAAAACTTGTCCCCGA
ATAAAATCCTCCTTCATGATTTGGAACAGTTCAAAAAAGACCAAAAATTC
ACCCCGCTGTATATGCCCGAAATATCCCCTTAAATCCATAATTCTTCTAT
TTGGAATGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCATATGAATTACTATGTGTGTATGTGCATAAACACAGAACATC
TTTCAGGAGACAAAGAAATACTATTACTTCAATTCTCAATATACTTAATT
TTTATCAGAATGTGAAATCACATGCAGCTAAAAAGAACTCTTGGAATAAC
CTTATAACTGGTCATATTTGCAGGTCACAGTGGTGGTATACACCCTTAAT
CCCAGCATTCAACAGGCAGAGGCAGGTGGACCTCTGGTAGTTCTAAGCCA
GCCTGGTCTACACAGTGAGCTCTAGGACAGCCAGTACTATGAAGAGAGAC
CCTGTCCTAAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATA
AATAAATAAATAAATAAATAAATAAAACAAAGCAGGTCATATTTAATTCA
AATAATCTAAAACTTGTACCATGCTTCTACATTCTGTATGTATACAGTGT
TAAAATAGACAACATTCTGTGTAGCTGTCTCAATACTGCATGTAAGGTTG
AAAAATGAAAGGATTCCTTAACTAGGTTTTCAAAAAAATAGATGTCCTCT
TTAATCTTTGAAAATAGTCTTAAAGAACAATGTAAGTTTAAAAGCACCTT
CTTTTGCAGGAAATTATAAGAATTTTTCTAAATTAACTCCCCCCTCCACA
TAGGTCTGACTCTTATGTAGCAATTTCCAAACTTGTGATCGTTACCACAT
AATGTGTACCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no385_l03.b1 MSMg01no385_l03.b1 CHROMAT_FILE:
MSMg01no385_l03.b1 PHD_FILE: MSMg01no385_l03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:20 2005
         (540 letters)



>mm_chr12_119976541_119977480
          Length = 940

 Score = 1025 bits (530), Expect = 0.0
 Identities = 533/534 (99%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattcctccatatactgagtcagttcctttccttgatgtagtgggaaatgtaagccaaa 66
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcctccatagactgagtcagttcctttccttgatgtagtgggaaatgtaagccaaa 266

                                                                       
Query: 67  tgaacacttttttcccaaagttgcttctggtcagaatgttctaccacagcaactgatgag 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tgaacacttttttcccaaagttgcttctggtcagaatgttctaccacagcaactgatgag 326

                                                                       
Query: 127 tatacacatactgaaataaaaacagctaaatggaaaatcgttactttgttccaatagtga 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tatacacatactgaaataaaaacagctaaatggaaaatcgttactttgttccaatagtga 386

                                                                       
Query: 187 acaattgttacttgtacagtttcactctgggagggaaatgaccatgggtaagtctagaaa 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 acaattgttacttgtacagtttcactctgggagggaaatgaccatgggtaagtctagaaa 446

                                                                       
Query: 247 gctctgaaagcaattgctttttagggcccagtcctgttgcctttttacacaagaaaaagc 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gctctgaaagcaattgctttttagggcccagtcctgttgcctttttacacaagaaaaagc 506

                                                                       
Query: 307 aaggtattccttttctttctttgagaaaacaaattagcattgattatgccacagctgtat 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 aaggtattccttttctttctttgagaaaacaaattagcattgattatgccacagctgtat 566

                                                                       
Query: 367 tcaaatacctgttcctgttctgaggcccgaacatactgaaagatttattcagtttgttgt 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 tcaaatacctgttcctgttctgaggcccgaacatactgaaagatttattcagtttgttgt 626

                                                                       
Query: 427 ttttaagaatataacctcacaaagtcattatgtatttacttgggatctttcttagcttga 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 ttttaagaatataacctcacaaagtcattatgtatttacttgggatctttcttagcttga 686

                                                                 
Query: 487 tttatcactccatatcacttttaaattctggaaaaggaccaattgtttttcaca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 tttatcactccatatcacttttaaattctggaaaaggaccaattgtttttcaca 740


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space:   492900
Effective search space used:   492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no385_l03.g1 MSMg01no385_l03.g1 CHROMAT_FILE:
MSMg01no385_l03.g1 PHD_FILE: MSMg01no385_l03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:20 2005
         (534 letters)



>mm_chr12_120129451_120130384
          Length = 934

 Score =  621 bits (321), Expect = 0.0
 Identities = 324/325 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catatgaattactatgtgtgtatgtgcataaacacagaacatctttcaggagacaaagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 catatgaattactatgtgtgtatgtgcataaacacagaacatctttcaggagacaaagaa 311

                                                                       
Query: 61  atactattacttcaattctcaatatacttaatttttatcagaatgtgaaatcacatgcag 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 atcctattacttcaattctcaatatacttaatttttatcagaatgtgaaatcacatgcag 251

                                                                       
Query: 121 ctaaaaagaactcttggaataaccttataactggtcatatttgcaggtcacagtggtggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 ctaaaaagaactcttggaataaccttataactggtcatatttgcaggtcacagtggtggt 191

                                                                       
Query: 181 atacacccttaatcccagcattcaacaggcagaggcaggtggacctctggtagttctaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 atacacccttaatcccagcattcaacaggcagaggcaggtggacctctggtagttctaag 131

                                                                       
Query: 241 ccagcctggtctacacagtgagctctaggacagccagtactatgaagagagaccctgtcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 ccagcctggtctacacagtgagctctaggacagccagtactatgaagagagaccctgtcc 71

                                    
Query: 301 taaaataaataaataaataaataaa 325
           |||||||||||||||||||||||||
Sbjct: 70  taaaataaataaataaataaataaa 46


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space:   484176
Effective search space used:   484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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