BAC Information

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BAC

Clone NameMSMg01-386E08
Chromosome12 (Build37)
Map Location 51,040,952 - 51,041,603
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665036, LOC100039366, Foxg1, ENSMUSG00000045946, LOC100039424, LOC665071, LOC665077, LOC100039455
Downstream genePrkcm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-386E08.T7 (MSMg01no386_e08.b1)MSMg01-386E08.TJ (MSMg01no386_e08.g1)
ACCAG489277AG489278
length723727
length of high quality
(start - end)
640 (68 - 707)652 (76 - 727)
definitionCHROMAT_FILE: MSMg01no386_e08.b1 PHD_FILE: MSMg01no386_e08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:29:03 2005CHROMAT_FILE: MSMg01no386_e08.g1 PHD_FILE: MSMg01no386_e08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:29:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGAGAGATCCGCGGAAT
TCTCTTCTATTCCAATTGGTCCTGGGCTTTTTTTGGTTAGGAGACTATTA
ATGACTTCTTCTATTTCTTTAGGACTGTGTAGATGGTTTATCTGATCCTG
ATTTAACTTTGGTACCTGTTATCTGCCTAGAAAATTGTCCATTTCATCCA
GATTTTCCAGTTTTGTTAATATAGGCTTTTGAAGTAGGATCTGATTTTTT
TTTATTTCCTCAGTTTCTTCTGCTATATCTCCCTTTTCATTTCTGATTTT
GTTAATTTGGGTACTGTCCCTGTGCCCTCTTGTTAGTCTGACTAAGGATT
TATCTATCTTGTTGATTTTCTCAAAGAACCAGCTCCTTGTTTGGTTGATT
CTTTATATAGTTCTTTTTGTTTCTATTTGGTCAGTTTTACCCCTGAGCTT
GGTTATTTCTCACTGTCTACTCCTCTTGGGTGTATTTGCTTCTTTTTGTT
CTAGAGCTTTCATGTGTACGGGTAAGCTGCTAGTGCATGCTCTCTCTAGT
TTCATTTTGCAGGCACTCAGAGCTATGCGTTTTCCTCTTAGCACTGCTTT
CATTGTGTCCCATAAGCTTAATTATGCTGTGCTTTCATTTTCATTAATTT
CTAANAGTCTTTATTTTTTTTCCTTTATTTCATTCTTGACCACGTTATCA
TTGAGTAGGGCACTGTTCAGCTT
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGGACCAGCCTCCCAACACCTAATG
GGCAAAGAAAGCCTTCTTCCTAGAAGTTCCTATTCACACACAAAAGAAAG
TAATTTCAAAAGAAATTGCAGCCTTCTCTGTTAAGTTAGATTGTTTTCTT
ATAAGTTTCGTTGCCTGGAGAGAACAATCAAAGATCCCCTGTGACTTTTT
AGAATAGATATTCTAGAAATTGAGTGTGAAATTGACCCTTAGCAATGTGA
ACAGTAAAGCTCACGGTCTTGTATTATGATGCACGAGCGCTATGCACTAG
CCATCAGAAGTCATTTATTTGACAAGCTATCCAGTTTATAACACAAATGC
AAAGAAATAATGAGATAATAAATAAGGCCATGAATAGCCATGGAGCATGT
TTCAAGATGATACAGTGAGGTCACGGTGTATAACTAATCAGAGGCTCTCA
ATGACTTTTTAACTTGCTATATTCATAATAGTTCTGTCTTGATTATCTAT
TTTCACAGCTCATAGCATAATAACATAGATCACTAGAGAGAGAAACTCTG
TGAGGCAGGTTGCAGCAAGAAGTGACATTAGAGAACAAAGGCTAGGATGG
AAAACTAATTAGGCATAGCAACTCAGGCATTGTAAACTGTGGATGTTGCT
CTGTAGGCAAACTGCTTCTGTAATATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no386_e08.g1 MSMg01no386_e08.g1 CHROMAT_FILE:
MSMg01no386_e08.g1 PHD_FILE: MSMg01no386_e08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:03 2005
         (652 letters)



>mm_chr12_51040752_51041803
          Length = 1052

 Score = 1207 bits (624), Expect = 0.0
 Identities = 645/652 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggaccagcctcccaacacctaatgggcaaagaaagccttcttcctagaagttcctattc 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 852 aggaccagcctcccaacacgtaatgggcaaagaaagccttcttcctagaagttcctattc 793

                                                                       
Query: 61  acacacaaaagaaagtaatttcaaaagaaattgcagccttctctgttaagttagattgtt 120
           ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 792 acacacaaaagaatgtaatttcaaaagaaattgcagccttctctgctaagttagattgtt 733

                                                                       
Query: 121 ttcttataagtttcgttgcctggagagaacaatcaaagatcccctgtgactttttagaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 ttcttataagtttcgttgcctggagagaacaatcaaagatcccctgtgactttttagaat 673

                                                                       
Query: 181 agatattctagaaattgagtgtgaaattgacccttagcaatgtgaacagtaaagctcacg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 agatattctagaaattgagtgtgaaattgacccttagcaatgtgaacagtaaagctcacg 613

                                                                       
Query: 241 gtcttgtattatgatgcacgagcgctatgcactagccatcagaagtcatttatttgacaa 300
           |||||| |  | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 gtcttggaaaaagatgcacgagcgctatgcactagccatcagaagtcatttatttgacaa 553

                                                                       
Query: 301 gctatccagtttataacacaaatgcaaagaaataatgagataataaataaggccatgaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 gctatccagtttataacacaaatgcaaagaaataatgagataataaataaggccatgaat 493

                                                                       
Query: 361 agccatggagcatgtttcaagatgatacagtgaggtcacggtgtataactaatcagaggc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 agccatggagcatgtttcaagatgatacagtgaggtcacggtgtataactaatcagaggc 433

                                                                       
Query: 421 tctcaatgactttttaacttgctatattcataatagttctgtcttgattatctattttca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tctcaatgactttttaacttgctatattcataatagttctgtcttgattatctattttca 373

                                                                       
Query: 481 cagctcatagcataataacatagatcactagagagagaaactctgtgaggcaggttgcag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 cagctcatagcataataacatagatcactagagagagaaactctgtgaggcaggttgcag 313

                                                                       
Query: 541 caagaagtgacattagagaacaaaggctaggatggaaaactaattaggcatagcaactca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 caagaagtgacattagagaacaaaggctaggatggaaaactaattaggcatagcaactca 253

                                                               
Query: 601 ggcattgtaaactgtggatgttgctctgtaggcaaactgcttctgtaatatc 652
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ggcattgtaaactgtggatgttgctctgtaggcaaactgcttctgtaatatc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space:   668964
Effective search space used:   668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)