BAC Information

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BAC

Clone NameMSMg01-386F09
Chromosome12 (Build37)
Map Location 60,834,720 - 60,968,167
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040183, Sec23a, Sip1, Trappc6b, Pnn, EG544872, Mia2, Mgea6, Fbxo33, LOC665628, LOC238199, LOC665639, LOC665644
Downstream geneEG622488, LOC665665, Ppia-ps12_475.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-386F09.T7 (MSMg01no386_f09.b1)MSMg01-386F09.TJ (MSMg01no386_f09.g1)
ACCAG489327AG489328
length735745
length of high quality
(start - end)		404 (324 - 727)513 (76 - 588)
definitionCHROMAT_FILE: MSMg01no386_f09.b1 PHD_FILE: MSMg01no386_f09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:29:07 2005CHROMAT_FILE: MSMg01no386_f09.g1 PHD_FILE: MSMg01no386_f09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:29:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,967,764 - 60,968,167)(60,834,720 - 60,835,232)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXCTAAATCGTGAGCTCCGCGGAATT
CACTGTTGTTTCGATAATCTTGTTTATTTGCTTTGTTTTACATTGCTTGA
CTTAGTGTTATAAGTGAAACTCGTTACACCTAAACTATCACGAGCTGTTA
GCAATGAATCCACGCATAAATTTATTTTACTGGTCATTTTCTAACATCTG
ATCTCAACAGCCCTAAAGAGTGAGATTTTTACTAGGATTTACATAAAAAA
TAAAAATGTTCCCTCAGGAACTGGTGGTGCTTAGTTCCTGGGAGGGCAGA
CAAAGACGCTCCTCATTATCNCTCTGCACAAAGCCAGAGGGCGGCTGAGG
CAAATGGACCTTGGATGCCAAATGAAATTGAAATCCCATTTCTTTCAGAA
AATTCATTAGGTATTAAGTGAAGACAAAAGGAGCAATGACAAATTTCTTC
AACTTTCAGATGACAGATGTGACCTGTGCAGCCCTCTTGTTAATAACCAT
GACAGAGAAAAGAAGAAAACGTGGCCAGTTTCACCTTTCCAGCTCAAATG
CTATTCTACTTTCAAACTTACCAAGGGGTTCTACAATGCAATATTTTGGC
AAGCTGTCTTGACACAGACTTGAGGTGCTATCACCTTGGGGATTGGTGCG
ATCATTTTCATTCCTCTAGGTTTGGTTCATACAATGTAGATGAAAATGTC
AAAATGTACAANAATCCTCTGTTAAAATATCTCTG

GATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCATTTCATGCATGAAGTTGATCAA
GTAGATAAAAATCACACTTCAGTTTACCAAGAAGAAAGATGGGAATGTAT
GCAATGAAACACACCAATACTGCTGGTCACAAATGAAGATTATAAGCAGC
TTTCACACTGCACAATTCATGTTTGGGAGCACTCAAAGAAAAACTTGTAA
TATTTGTAATGGAATCCCATTGCAATCTTTATAGGCCAATTGAAACAAAA
TATTTACATGCAGGGTCTAGTATTGCTATATTAGAAACTACTCTGGGAGA
TGTTCAATATAGACTGGGTTAGAAATCACCAAAGAGGAATGATTTCACAT
TTGAAATAAGAGGAAATAGCGCACCCAGTGGGGTAGTTCCTTAGAGAGAA
TTGAGTGAGAAACCTATTTGTTAAATACGGCATTATATCATAGAGGGCCG
GTGACAAAGAGACTCTAGAAAGAATGACTCTATTACACTCCATCCTAGGG
ATGGGAGTTTCAGAGCTATTGGACCCGAGTTGTTTTTGCCAGGGGAGCCG
TCTACCTAGCTGAATTTCCTGCTGTTGCTTTCTCTTAAGTCATAACTTAA
TGTTATTTGGCTGTTTAGCCCAAGACTTGACTTTATAATATTCCTATCTT
CAATAAAATTTATTTGAAAATATGTATAATAATGTTCTCCCAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no386_f09.b1 MSMg01no386_f09.b1 CHROMAT_FILE:
MSMg01no386_f09.b1 PHD_FILE: MSMg01no386_f09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:07 2005
         (404 letters)



>mm_chr12_60967564_60968367
          Length = 804

 Score =  745 bits (385), Expect = 0.0
 Identities = 399/404 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgcacaaagccagagggcggctgaggcaaatggaccttggatgccaaatgaaattgaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 604 ctgcacaaagccagagggcggctgaggcaaatggaccttggatgtaaaatgaaattgaaa 545

                                                                       
Query: 61  tcccatttctttcagaaaattcattaggtattaagtgaagacaaaaggagcaatgacaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 tcccatttctttcagaaaattcattaggtattaagtgaagacaaaaggagcaatgacaaa 485

                                                                       
Query: 121 tttcttcaactttcagatgacagatgtgacctgtgcagccctcttgttaataaccatgac 180
           ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 484 tttcttcaactttcagatggcagatgtgacctgtgcagccttcttgttaataaccatgac 425

                                                                       
Query: 181 agagaaaagaagaaaacgtggccagtttcacctttccagctcaaatgctattctactttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 agagaaaagaagaaaacgtggccagtttcacctttccagctcaaatgctattctactttc 365

                                                                       
Query: 241 aaacttaccaaggggttctacaatgcaatattttggcaagctgtcttgacacagacttga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 aaacttaccaaggggttctacaatgcaatattttggcaagctgtcttgacacagacttga 305

                                                                       
Query: 301 ggtgctatcaccttggggattggtgcgatcattttcattcctctaggtttggttcataca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 ggtgctatcaccttggggattggtgcgatcattttcattcctctaggtttggttcataca 245

                                                       
Query: 361 atgtagatgaaaatgtcaaaatgtacaanaatcctctgttaaaa 404
           |||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 244 atgtagatgaaaatgtcaaaatgtacaaaaatcctctgttaaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 804
Length adjustment: 9
Effective length of query: 395
Effective length of database: 795
Effective search space:   314025
Effective search space used:   314025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no386_f09.g1 MSMg01no386_f09.g1 CHROMAT_FILE:
MSMg01no386_f09.g1 PHD_FILE: MSMg01no386_f09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:07 2005
         (513 letters)



>mm_chr12_60834520_60835432
          Length = 913

 Score =  969 bits (501), Expect = 0.0
 Identities = 510/513 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcatttcatgcatgaagttgatcaagtagataaaaatcacacttcagtttaccaagaaga 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 tcatttcatgcatgaagttgatcaagtacataaaaatcacacttcagtttaccaagaaga 260

                                                                       
Query: 61  aagatgggaatgtatgcaatgaaacacaccaatactgctggtcacaaatgaagattataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagatgggaatgtatgcaatgaaacacaccaatactgctggtcacaaatgaagattataa 320

                                                                       
Query: 121 gcagctttcacactgcacaattcatgtttgggagcactcaaagaaaaacttgtaatattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcagctttcacactgcacaattcatgtttgggagcactcaaagaaaaacttgtaatattt 380

                                                                       
Query: 181 gtaatggaatcccattgcaatctttataggccaattgaaacaaaatatttacatgcaggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtaatggaatcccattgcaatctttataggccaattgaaacaaaatatttacatgcaggg 440

                                                                       
Query: 241 tctagtattgctatattagaaactactctgggagatgttcaatatagactgggttagaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctagtattgctatattagaaactactctgggagatgttcaatatagactgggttagaaa 500

                                                                       
Query: 301 tcaccaaagaggaatgatttcacatttgaaataagaggaaatagcgcacccagtggggta 360
           |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 501 tcaccaaagaggaatgatttcacatttgaaataagaggaaatagtgtacccagtggggta 560

                                                                       
Query: 361 gttccttagagagaattgagtgagaaacctatttgttaaatacggcattatatcatagag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gttccttagagagaattgagtgagaaacctatttgttaaatacggcattatatcatagag 620

                                                                       
Query: 421 ggccggtgacaaagagactctagaaagaatgactctattacactccatcctagggatggg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggccggtgacaaagagactctagaaagaatgactctattacactccatcctagggatggg 680

                                            
Query: 481 agtttcagagctattggacccgagttgtttttg 513
           |||||||||||||||||||||||||||||||||
Sbjct: 681 agtttcagagctattggacccgagttgtttttg 713


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space:   454209
Effective search space used:   454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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