BAC Information

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BAC

Clone NameMSMg01-386M23
Chromosome12 (Build37)
Map Location 60,513,858 - 60,514,172
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040183, Sec23a, Sip1, Trappc6b, Pnn, EG544872, Mia2, Mgea6, Fbxo33, LOC665628, LOC238199, LOC665639
Downstream geneLOC665644, EG622488
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-386M23.T7 (MSMg01no386_m23.b1)MSMg01-386M23.TJ (MSMg01no386_m23.g1)
ACCAG489691AG489692
length737740
length of high quality
(start - end)
628 (70 - 697)333 (327 - 659)
definitionCHROMAT_FILE: MSMg01no386_m23.b1 PHD_FILE: MSMg01no386_m23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:29:42 2005CHROMAT_FILE: MSMg01no386_m23.g1 PHD_FILE: MSMg01no386_m23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:29:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCTTGGTTTTCGATGTTATGTAGNCCTTTTCATTTCTGATTTTGTT
AATTTTGATACTGTCTCTATGTCTTTTAGTTATTTTGGAAATGGGTTTCT
CTATCTTATTGATTTTCTTAAGGAACCAACTCTTTGTTTCATTGATCACT
TTGTTTCTGTTTTATTGATTTCACCTCTCAGTTTGATTATTTCTTGCAAT
CTACTCCTCTTGGGTGTGCTTACTTTTTTTGTTCTGGTGTACTATTAAGT
TGCTAGTATGAGATACCTCACTTTTTTTTTTAATGTAGGCGCTTAGTGCT
ATGAACTTTTCTCTTGGCACTGCTTTCATTGTGTCCCACAAGTTAGAGTA
TGCTGTTTATTCATTTTCATTGAATTCTAGAAAGTCTTTGATTTCTTTAT
TTCTGTCTGGACACGTTTTTCATTTAGTACAGAATTGTTCAGTTTCCATG
AGTTTGTAAGCTTTCTGTTATTTCTGCTGTTGTTGATATCCAGCTTTAAT
CTGTAGTGATCTGATAGGATTCTGGGAGTTGTTGCCATTTTCTTGTGTCT
TAGTTAGGATTTTGCTGCTATGAACAGACACAACGACCAAGGACATTTAG
TTGGGGCTGGCATACAGGTTCAGAGGTTCAGTTCATTATCATTAAGGTGG
GGGTATGGCATCATCCAGGCAGGCATGGTGTAGGAGA
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTTTCCCGAAATACATTCAGTTGGAACCATACAGGAACCGAGAAG
CTACTTTTTAATTGCTTCTTGACACTCTGAAGAGGAAAGGTGTGTGTGGA
AAGTCTTACTTTCCTGGGATTTGTGCCCACTAGTGAAACATTCCACTTCT
GGTGGAATGGTGAGCTTGCCTCACTGGGTTAGGGCATGGGAGCTATGGAG
TATACTTGTACCACTGAAGGACCTGAAGCTCCTCTTAATAATTGGTTAGT
AAAGAGGTCATAAGATATTTTTTATTTGTGTTGAAAGTCTCATTAGAGAT
AATCTGTACGTCAAGTCTGTATGGGTTGCTATCATTGGCAAGGACATGTT
GCAGAATAGGGACTTTCCATGAGATTCAGTTGGTCAGGAAAATTACCTGT
GGAGGTGCAGGAAGTAGTATCTGATAGGCTCACGTAATGATGCTAAGTGT
TCAGCATTCAGGGAAGGAAGAAAGCCTCAACCCTTCTTGAAATGATTCAA
CTTTCAGAATATCCCAGTGCATGTAATTTCTAATTAGCTAAATGGGGGTT
AGAGGAAGTCCTTGTTCCTCTAAGACAGAGTCTTCCTTTGGTAGGGAAAA
TGGCCAAGTCTTATTACAATTAGGTCTTATCGCCACCTAAAGCTAANATG
AGGTATTCCCATTTTGGAAAATGCACATAACTACCAAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no386_m23.g1 MSMg01no386_m23.g1 CHROMAT_FILE:
MSMg01no386_m23.g1 PHD_FILE: MSMg01no386_m23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:42 2005
         (333 letters)



>mm_chr12_60513640_60514372
          Length = 733

 Score =  601 bits (311), Expect = e-176
 Identities = 314/315 (99%)
 Strand = Plus / Plus

                                                                       
Query: 19  agagataatctgtacgtcaagtctgtatgggttgctatcattggcaaggacatgttgcag 78
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 agagataatctgtacgtcaagtctgtatgggttgctatcattggcaaggacatgttgcag 278

                                                                       
Query: 79  aatagggactttccatgagattcagttggtcaggaaaattacctgtggaggtgcaggaag 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 aatagggactttccatgagattcagttggtcaggaaaattacctgtggaggtgcaggaag 338

                                                                       
Query: 139 tagtatctgataggctcacgtaatgatgctaagtgttcagcattcagggaaggaagaaag 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 tagtatctgataggctcacgtaatgatgctaagtgttcagcattcagggaaggaagaaag 398

                                                                       
Query: 199 cctcaacccttcttgaaatgattcaactttcagaatatcccagtgcatgtaatttctaat 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 cctcaacccttcttgaaatgattcaactttcagaatatcccagtgcatgtaatttctaat 458

                                                                       
Query: 259 tagctaaatgggggttagaggaagtccttgttcctctaagacagagtcttcctttggtag 318
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 459 tagctaaatgggggttagaggaagtccttgttcctctaagacagagtctttctttggtag 518

                          
Query: 319 ggaaaatggccaagt 333
           |||||||||||||||
Sbjct: 519 ggaaaatggccaagt 533


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 733
Length adjustment: 9
Effective length of query: 324
Effective length of database: 724
Effective search space:   234576
Effective search space used:   234576
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)