CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATCCAGTTAATTCTGGAGAGACTAACTCAGTCTTTCAGAAGAGCAC
ACATAGTCTTCATTTTTTAAGTTAATGCCCTCAGTGTTTACTGAGCCCCT
GGAAAGCTGGTCCTTTTCTCACTAAAGCTGCTGTAGAATCACAAATGTGC
TTCTGTTCACAGAGCTTTCTTTAAGGGACGACATGAAGAAGGAATGCCAC
TGTGACAAACTCCACAGTGCAGCAACAGAACATAAAATATCAACAGTGTT
TTCCTGATTAACTGCCAAACTTCCATCGCTTCTGTGGGCGGCAGGTAGGT
TGCCTGGACAGGTATAAATCTAGCATTTTCTTGGTGCATGCTTTGAGTTT
TTATTGATACAAAATGCTTGGCGGTACACAAGTTGGTACTAGTTGGAACC
CCTCAAATACCATTCACTTTTTTTTCTTTCTCTTCTTTTTTCTTGACAAG
GAAGGACAGCCTTAAAAACAGAAGGCTACCATTCATTAATAAGATTTTTT
TTTAAAAAAAGAACCCATAATGGATAGAGTATTGTGTTAAGAGTGCAATG
AAAGTAAGTCAGGGGAGGCCTTTTCTTCCAGTCAATGCATTTCTGTGAAT
ACCATAAAACCACTAGAAATAATGATGTCACCACACACACACACACACAC
CTACACATCACACACACACACACACAGGCACACACATGCACACACATACA
TACACCTACACATA

TGGTAGGCTGGNGGCGCCGGCTTCGCAGCCGCNGAACANAGAAGGATTGC
GGCACCGAGCNCNNACNNGGCCCCAGAACGGAAAAGGACGGGAAAGACCA
CCACAAGCCNGAAACNNNCNGAAGNNCAGGAGNCNGAAAGNACAAACANC
GGAAANACCCAGCACACGAAAGNCAAAAACAAAACCNCCNCAAAGCCACA
AGNACCGNNAAAAGGCGGATATGACAGAAAAAAAGAAGAACAGGACNNGA
GNGACANGGAACCCAAGCAAAAAAGTATTTTTTTTGCGGACGGNANANAN
GCACCCAAGAAAACCAACAGGGCCCCGCCCAACGCACCAGAAAAAANCGA
AGCCNAGGCAANCCANAGAGACCNCAGAANNAAACGCNAAAACCAGAAAA
NGAAGGCACAGNCCAANACAAAGAAAAAAAAAGCAACCNNCACAGGNCAA
ANAAGGACCGGNCCAAGCACNCGACACNNCCCGAANACAGAAANCNACAC
AACGGCAGCGANACGCCCGGCNNNCCANNCNCCCAGAGNGGNCAGCCAGA
ACACCCCGCANAAAGCNACCGCAAACCCAGACACNGCNANCNCANGGCNN
GAAGANGCACCGCTTATTTATACAAAACAAGCCAACCCCACGGGGCGGGA
ACCCAAACTACTGAAAGGCTACCTATCTTGTTTGGTGACACCATCAGGGA
CTG

Query= MSMg01no386_n19.b1 MSMg01no386_n19.b1 CHROMAT_FILE:
MSMg01no386_n19.b1 PHD_FILE: MSMg01no386_n19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:45 2005
         (681 letters)



>mm_chr12_37082140_37083222
          Length = 1083

 Score = 1228 bits (635), Expect = 0.0
 Identities = 667/683 (97%), Gaps = 12/683 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gactaactcagtctttcagaagagcacacatagtcttcatttttt-aagttaatgccctc 59
           |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct: 201 gactaactcagtctttcagaagagcagacatagtcttcatttttttaagttaatgccctc 260

                                                                       
Query: 60  agtgtttactgagcccctggaaagctggtccttttctcactaaagctgctgtagaatcac 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtgtttactgagcccctggaaagctggtccttttctcactaaagctgctgtagaatcac 320

                                                                       
Query: 120 aaatgtgcttctgttcacagagctttctttaagggacgacatgaagaaggaatgccactg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaatgtgcttctgttcacagagctttctttaagggacgacatgaagaaggaatgccactg 380

                                                                       
Query: 180 tgacaaactccacagtgcagcaacagaacataaaatatcaacagtgttttcctgattaac 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgacaaactccacagtgcagcaacagaacataaaatatcaacagtgttttcctgattaac 440

                                                                       
Query: 240 tgccaaacttccatcgcttctgtgggcggcaggtaggttgcctggacaggtataaatcta 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgccaaacttccatcgcttctgtgggcggcaggtaggttgcctggacaggtataaatcta 500

                                                                       
Query: 300 gcattttcttggtgcatgctttgagtttttattgatacaaaatgcttggcggtacacaag 359
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 501 gcattttcttggtgcatgctttgagtttttattgatacaaaatgcttgggggtacacaag 560

                                                                       
Query: 360 ttggtactagttggaacccctcaaataccattcactttttttt-ctttctcttctttttt 418
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 561 ttggtactagttggaacccctcaaataccattcactttttttttctttctcttctttttt 620

                                                                       
Query: 419 cttgacaaggaaggacagccttaaaaacagaaggctaccattcattaataagattttttt 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cttgacaaggaaggacagccttaaaaacagaaggctaccattcattaataagattttttt 680

                                                                       
Query: 479 ttaaaaaaagaacccataatggatagagtattgtgttaagagtgcaatgaaagtaagtca 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttaaaaaaagaacccataatggatagagtattgtgttaagagtgcaatgaaagtaagtca 740

                                                                       
Query: 539 ggggaggccttttcttccagtcaatgcatttctgtgaataccataaaaccactagaaata 598
           |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggggagaccttttcttccattcaatgcatttctgtgaataccataaaaccactagaaata 800

                                                                       
Query: 599 atgatgtcaccacacacacacacacacacctacacatcacacacacacacacacaggcac 658
           |||||||||||||||||||||        ||||||||||||||||||||||||  |||||
Sbjct: 801 atgatgtcaccacacacacac--------ctacacatcacacacacacacaca--ggcac 850

                                  
Query: 659 acacatgcacacacatacataca 681
           |||||||||||||||||||||||
Sbjct: 851 acacatgcacacacatacataca 873


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1083
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1073
Effective search space:   719983
Effective search space used:   719983
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)