BAC Information

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BAC

Clone NameMSMg01-387E21
Chromosome12 (Build37)
Map Location 37,833,480 - 37,833,864
singlet/doubletsinglet
Overlap genenone
Upstream geneBzw2, Ankmy2, 1700108M19Rik, Sostdc1, 4930579E17Rik, LOC638858
Downstream geneMeox2, A530016O06Rik, LOC100043139, Dgkb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-387E21.T7 (MSMg01no387_e21.b1)MSMg01-387E21.TJ (MSMg01no387_e21.g1)
ACCAG490069AG490070
length706794
length of high quality
(start - end)
72 (164 - 235)385 (74 - 458)
definitionCHROMAT_FILE: MSMg01no387_e21.b1 PHD_FILE: MSMg01no387_e21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:19 2005CHROMAT_FILE: MSMg01no387_e21.g1 PHD_FILE: MSMg01no387_e21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTTTCCTCTCAAAATTGCGGGCGCTATACGATTCTTATTCCCAGAGGA
TCCGCGGAATTCTTTTATTACCCAATGTCCACAGAGATGACAAGTTATAA
ATGTAGATAGGTGGCAATATTCCAAAGTATTTCTCACACAAACATTTGCT
TGGTACTCATCACAACTATGTAAATACAGTAAAATACATGCTTATTTGTA
AAGTCAACTTCCCTGTTTGATATAGCACACCTAAAAGTGATTATAGAACA
TGCCCCGTTCTATATTTTACACCCTATATTAATACAGAGATTTTTTACTC
TTCCATAGACCCTAAGACCTTCTCATAGCCTGTGTATAAAGGTACATAAC
AGAAAATTACGCCAAGACATTGCCAGAACTTTTTTATACCCCGCACAAAG
AGTAATAACAATAAATTCTCCTCATCTACTGACAATCTTCCCATTTTTCC
CCTCCACACCACACCTCGATTTCCCTACCCCCACTCTTCTTAGAATTCTT
TCTCCTCTTCGCCCTTTATACCCGCCCCCCCCGCCCCCTTCCCCCTCTTC
CCCCCCCCCCCTTTCCCCCTTTCACCCCTTTCCCTCCTTCCTTTCCCTTT
CCCCCCCTTCCCTCCCCCCCTTTCTCTTTATCTTTTTCCCCTAATTTCCC
CAACTCCTCCTTTCCCCCCTCTCTTTCCCCCCCCCCTTTTCTTCCCCTTC
TTTTTN
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTGATCAACCCCCACTCCACCCCATCT
CTAAGTTGTGCAAAACAATTCGACATTTCACACGGATGTTAAAGTTTGTT
TGGAAGTTCCTTTTCTGGAGAACCTCTTAAAATAAAGGGTAACAGACTGA
AGATGGCAGAAGGAGCGGCAGAGAGAAGGGTTCTGCCTTGGGGACATTCC
TCCAAAATTCATCAATACCTTTTCCTAATTTAAACCAGATGTCTAGTTCA
GGTTGCTGTACTCATTAATCCCATTAGCAATTTCAAAGACTTGGCCATCA
TCTTCTAGTCACCCAGACAATAAACATATGGCAGTTAACCGTAGTGGCAC
ACTCCAAGTCCTGAACACCCTAGGCTACTGCAGACATCCCCTTGGCAGAC
ACTTCCTAGATAGGAACAGGCTTTCCTGCAGCCCACTCTCCCAAGCTTGT
TGTGGGATAGGACAGGACTTCACGAAGATTCTGTGGCCGCCCAGCTAATT
GCTGTGTTAACCCAGCCCCTGTTCTCAAAATTACTGGGGGCAGGGGGGCC
ATTATTTATTCTCGGACACAAGGTGGAAACCGGGGGAAATGACCCTGAAA
ACCGGCCCCCCCTAAGGGAAGGTTAATTTTTCTCCCGCTCTCCAAAAAGC
GTGGGGGATTAATTGTGTTTTCTCCCTATTTTTCCTCTTTCTCCAACAAC
CCCCTTTTCCACTACGCATTGTTTTTCTCAAATCCCCTCCTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no387_e21.g1 MSMg01no387_e21.g1 CHROMAT_FILE:
MSMg01no387_e21.g1 PHD_FILE: MSMg01no387_e21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:30:19 2005
         (385 letters)



>mm_chr12_37833280_37834064
          Length = 785

 Score =  721 bits (373), Expect = 0.0
 Identities = 382/385 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgatcaacccccactccaccccatctctaagttgtgcaaaacaattcgacatttcacac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 ctgatcaacccccactccaccccatctctaagttgtgcaaaacaattcgacttttcacac 260

                                                                       
Query: 61  ggatgttaaagtttgtttggaagttccttttctggagaacctcttaaaataaagggtaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggatgttaaagtttgtttggaagttccttttctggagaacctcttaaaataaagggtaac 320

                                                                       
Query: 121 agactgaagatggcagaaggagcggcagagagaagggttctgccttggggacattcctcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agactgaagatggcagaaggagcggcagagagaagggttctgccttggggacattcctcc 380

                                                                       
Query: 181 aaaattcatcaataccttttcctaatttaaaccagatgtctagttcaggttgctgtactc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaattcatcaataccttttcctaatttaaaccagatgtctagttcaggttgctgtactc 440

                                                                       
Query: 241 attaatcccattagcaatttcaaagacttggccatcatcttctagtcacccagacaataa 300
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 attaatcccattagcaatttcaaagacttggccatcatcttctggtcacccagacaataa 500

                                                                       
Query: 301 acatatggcagttaaccgtagtggcacactccaagtcctgaacaccctaggctactgcag 360
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acatatggcagttaaccatagtggcacactccaagtcctgaacaccctaggctactgcag 560

                                    
Query: 361 acatccccttggcagacacttccta 385
           |||||||||||||||||||||||||
Sbjct: 561 acatccccttggcagacacttccta 585


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 785
Length adjustment: 9
Effective length of query: 376
Effective length of database: 776
Effective search space:   291776
Effective search space used:   291776
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)