BAC Information

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BAC

Clone NameMSMg01-387F10
Chromosome12 (Build37)
Map Location 86,304,244 - 86,456,671
singlet/doubletdoublet
Overlap geneFcf1, Ylpm1, Prox2, Dlst
Upstream geneAcot2, Acot1, Acot4, Acot3, Acot5, LOC666963, Acot6, Dnalc1, Pnma1, C130039O16Rik, EG432676, Zadh1, Zfp410, 9830169C18Rik, Coq6, Entpd5, 2900006K08Rik, Rnf113a2, Aldh6a1, Lin52, Chx10, Abcd4, 7420416P09Rik, Tmem90a, Npc2, Isca2, Ltbp2, 1110018G07Rik
Downstream geneRps6kl1, LOC100042021, Pgf, Eif2b2, Mlh3, Acyp1, 2810002I04Rik, Nek9, Tmed10, LOC100042549, LOC667119, Fos, EG667124, Jundm2, LOC100042073, Batf, BC011209, 0610007P14Rik, Ttll5, Tgfb3, 1700019E19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-387F10.T7 (MSMg01no387_f10.b1)MSMg01-387F10.TJ (MSMg01no387_f10.g1)
ACCAG490094AG490095
length772775
length of high quality
(start - end)		418 (46 - 463)396 (82 - 477)
definitionCHROMAT_FILE: MSMg01no387_f10.b1 PHD_FILE: MSMg01no387_f10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:22 2005CHROMAT_FILE: MSMg01no387_f10.g1 PHD_FILE: MSMg01no387_f10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,456,258 - 86,456,671)(86,304,244 - 86,304,639)
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTCAATTCTCCGAAGCAAACATGACCTGCAGCCCTCAGCTGCAC
TTGTATCCAACTAGAATATTAGGTTCTCTGAGATGCCCATTCTCATTTTT
AAGAAAAAGATAAGAAAGATAGTTTCAAGTTAACACTCATTATACTTTAA
CTACCTGCGAAGGTAGTTATTAAGTATACTTCGAAGTATACTTTTGGTCC
AACACCTGACCACTGAGCTGATGACAAAGGTAGATTATGATAAAACGACC
ATGACCATCCAGGATGGGTCTATGGTTCCAACCTAATGCCCTTAATGTCT
AGAACTGGAGATCCGTGAAGACATCGGAGTTTAAATTTAGAATCTGTGTC
TAAGTAAATCTACCATGGCCACATATCTGCATCACCCATTGATACTTACA
CCATCTTCCTGTTGTCAGGGTAACCTGGTCCCCGACATAAGGAGACCCCT
GTCAGAAACCAACAACTCTTAATCTACAGCTCCTAACCCACCCCGGATTA
AATAGAACTATTTCTCCCCCAAAGCCTAGACCGAGTGGGCCATCTTCTCG
CATTAGTACAACCTTTCTCTTTTAAATCCCGCTTTCTCAAGGCTCTACCC
GCCCTTTTTGGCCCTCCTTTTTCTTGGTAAACCAACATCGACCGTCCCCT
CGCCTCCATTTACGCCTCCCTTTCTTGTTTCGCTTTATTCCCCCTTCCCT
ATCAATTCCCCCCCCCCCCCTT

NNNNNCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGTCTCTTAATATATGTG
AGATCCCAAGATAACCCTCCAGTACCCAGTATGGAAACTGAGAGATACAA
CTCTGCCGTGGACCTGGCCTGGCATTCTTCATCACTAGCCACTGACACCT
GTCAGGACAGGGCTACACTTCAAAGACAGAAATGGTATGTAATCCTTAAT
ACCAAGAAATACCTGCCTATGCAGTGCTTCCCCAAGTACACAATGACACG
ACATCATGCTGCTTTAGCTTCAATTCCTATAAAAGGAGTTTCTCCCCTTA
AGTCCTCATTTGCCATATGGCAAGTGGACTGCTGTTCCGTGTACAGGGCA
TGAAAGAAGCTGTATTCCAGGAACTCTATGTGTGTGGAAAAAACCCTAAC
AGTCATGAGGAAGTGAATGGAGTCAGGGAACACTGGTCCCATACACCTGC
ATATGTTGAAAAATAATAAAACCTCAAACCCTTTTGAATTTTAAAGACAG
GTGAACAGGTGCTTATAGCTTTACCAATGGACCTGAAATAGGGCCCCCCC
CATTTACCCATTGATTACTCCGTCAGAATGACCCTACCTAGTTCTCCCTT
TCCATGTTCTTTGGTTTCCCACCCCTGACCATATCCTCCTCGGATATCTA
TGTTCCCTTTTTTTTTTCCTCCTGGCTACCCGGGGCTTTCTCTTATTTTC
ACACTCTTCTTATCTACTTCCTCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no387_f10.b1 MSMg01no387_f10.b1 CHROMAT_FILE:
MSMg01no387_f10.b1 PHD_FILE: MSMg01no387_f10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:30:22 2005
         (418 letters)



>mm_chr12_86456054_86456871
          Length = 818

 Score =  777 bits (402), Expect = 0.0
 Identities = 411/414 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctcaattctccgaagcaaacatgacctgcagccctcagctgcacttgtatcca 64
           ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 618 gaattctctcaattctctgaagcaaacgtgacctgcagccctcagctgcacttgtatcca 559

                                                                       
Query: 65  actagaatattaggttctctgagatgcccattctcatttttaagaaaaagataagaaaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 actagaatattaggttctctgagatgcccattctcatttttaagaaaaagataagaaaga 499

                                                                       
Query: 125 tagtttcaagttaacactcattatactttaactacctgcgaaggtagttattaagtatac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tagtttcaagttaacactcattatactttaactacctgcgaaggtagttattaagtatac 439

                                                                       
Query: 185 ttcgaagtatacttttggtccaacacctgaccactgagctgatgacaaaggtagattatg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ttcgaagtatacttttggtccaacacctgaccactgagctgatgacaaaggtagattatg 379

                                                                       
Query: 245 ataaaacgaccatgaccatccaggatgggtctatggttccaacctaatgcccttaatgtc 304
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 378 ataaaacgaccatgaccatccaggatgggtctatggatccaacctaatgcccttaatgtc 319

                                                                       
Query: 305 tagaactggagatccgtgaagacatcggagtttaaatttagaatctgtgtctaagtaaat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tagaactggagatccgtgaagacatcggagtttaaatttagaatctgtgtctaagtaaat 259

                                                                 
Query: 365 ctaccatggccacatatctgcatcacccattgatacttacaccatcttcctgtt 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ctaccatggccacatatctgcatcacccattgatacttacaccatcttcctgtt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 818
Length adjustment: 9
Effective length of query: 409
Effective length of database: 809
Effective search space:   330881
Effective search space used:   330881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no387_f10.g1 MSMg01no387_f10.g1 CHROMAT_FILE:
MSMg01no387_f10.g1 PHD_FILE: MSMg01no387_f10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:30:22 2005
         (396 letters)



>mm_chr12_86304044_86304839
          Length = 796

 Score =  696 bits (360), Expect = 0.0
 Identities = 387/396 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgtctcttaatatatgtgagatcccaagataaccctccagtacccagtatggaaactga 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 ttgtctcttaatatatgtgagatcccaaggtaaccctccagtacccagtatggaaactga 260

                                                                       
Query: 61  gagatacaactctgccgtggacctggcctggcattcttcatcactagccactgacacctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagatacaactctgccgtggacctggcctggcattcttcatcactagccactgacacctg 320

                                                                       
Query: 121 tcaggacagggctacacttcaaagacagaaatggtatgtaatccttaataccaagaaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcaggacagggctacacttcaaagacagaaatggtatgtaatccttaataccaagaaata 380

                                                                       
Query: 181 cctgcctatgcagtgcttccccaagtacacaatgacacgacatcatgctgctttagcttc 240
           |||||| | |||||||||||||||||||| |||| ||||| || ||||||||||||||| 
Sbjct: 381 cctgcccaagcagtgcttccccaagtacagaatggcacgatataatgctgctttagcttg 440

                                                                       
Query: 241 aattcctataaaaggagtttctccccttaagtcctcatttgccatatggcaagtggactg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aattcctataaaaggagtttctccccttaagtcctcatttgccatatggcaagtggactg 500

                                                                       
Query: 301 ctgttccgtgtacagggcatgaaagaagctgtattccaggaactctatgtgtgtggaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 501 ctgttccgtgtacagggcatgaaagaagctgtattccaggaactctacgtgtgtggaaaa 560

                                               
Query: 361 aaccctaacagtcatgaggaagtgaatggagtcagg 396
           ||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaccctaacagtcatgaggaagtgaatggagtcagg 596


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 796
Length adjustment: 9
Effective length of query: 387
Effective length of database: 787
Effective search space:   304569
Effective search space used:   304569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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