BAC Information

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BAC

Clone NameMSMg01-387L21
Chromosome12 (Build37)
Map Location 69,425,487 - 69,425,859
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040745, LOC100040681
Downstream geneLOC100040696, LOC665967, LOC665973, Rps29, Ppil5, Rpl36al, Mgat2, 1110034A24Rik, 9330151L19Rik, Pole2, Klhdc1, Klhdc2, Sdccag1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-387L21.T7 (MSMg01no387_l21.b1)MSMg01-387L21.TJ (MSMg01no387_l21.g1)
ACCAG490404AG490405
length780783
length of high quality
(start - end)
323 (71 - 393)450 (82 - 531)
definitionCHROMAT_FILE: MSMg01no387_l21.b1 PHD_FILE: MSMg01no387_l21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:53 2005CHROMAT_FILE: MSMg01no387_l21.g1 PHD_FILE: MSMg01no387_l21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACCAGAGCTGACCAAGAAAGAATTAAGAAAGTCCGATATAATAGAA
TAATTATGCACACCAAGGCCAACTGAAAAGCAGTCATGCACAAATGAAAT
CTATACAGCCATTGTCCAGGGCTAAGGTTAGGAGAATTAGGAACACCTGT
TTTTTACAAAGAGCTGCTTGGAGCTACTGAGATGTTTCCATCCTGGCCTA
CTGCAGGCAGTCCCTTATTTCAGATGGCAAGTCCCCTGGAGGGATGTGTC
TCCTGCTTCTCAGTGTCCCAGACTCCATCCTTTTCTACAAGGAGCTGCCG
CGCGCTTCTGAGATGTCTCCATCCTGACTTACTGCAGGCAGCCCCTGTCA
TGGTATGCTGTCCCCAGCACAATATCTAAAACAACCGCTCCAATAATTCC
CCACCTACTAAATACCACCATGTTTATACTCGTTATTGCTGCCCCCATTA
TATCACTGCCTCATACCCAACACACCATTATCCGTGGCCACCACTCCGTT
CTGCCCCAAACCCCCCCCCCTCCTGTCATCCCTTTAATTACCTCCCCTCC
CTTCCCCCCATACCCCCTCTTTCCCCCTTCCGCCCAATTCCCCCTTACCC
CCTCCCTTACCCCCTTCCTTACCCTATCCCCCCCTTCCCTTCCACCCCCT
TTCTCCTTTCTCTATCTCCCCCCTTTCCGCCCTCCCCCTTTCCCCCCTCT
TCTCCCCTCCCCCTTTTTCCCCTTCTTTTG
NCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAGTTAACTGGAGTCCGT
TGCCTGACTTTTTTCCCTATCTATCTATCTATCTATCTATCTATCTATCT
ATCTATCTATCTATCTATCTATCTATCTATCTTTAAATCACGTGTATGTG
TATGGTTTGTGCATGTGAGTGCACTGATTGTGAGGGACTGAAGAGGGGAT
TGCATTCCTGTAGCTACAGTTACATGTAAGCTGGGTGCTGGGAATCGAAC
TTGAGTTGTCTGCAAGAGAGCAGAGTAAACTTTGGATCCTTGAACCATCT
TGGCAGCCAAATTGTCTATACTTTTAGTCTCCATATACAGTTAACCAATT
AATAATAAGCCTCGTGTTTATTATTATTTAGACACTTTTCTTGACCTTGA
AGTTTCAGAACAATGTCCTACCTTTTAACCAGCTCTATACAGATGCATAG
TAAGCTTTCATGAGTGATGTCCCTATGTGATGTGCCTACCTCTTTACTCA
AAACATTGAGTCATGATTTACTTTCCCTTTAAACACTGCCAATTCTTCTA
CAAAGTTTCTAAATATTTCCCGAGCTTTTCCTTTTTCTGTGGGGGGGGGG
CTTCATAAATATTTGTCCCTCTAAATGATGGTGGCCCCTCTAATTTTGCT
TCGAACAAAAGTTTATTTAAAAATTTTATTTTCCCGCCTACGCCCTAATT
AATCCTCTTTTTTCTTTTTCTTTAACATAACAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no387_l21.g1 MSMg01no387_l21.g1 CHROMAT_FILE:
MSMg01no387_l21.g1 PHD_FILE: MSMg01no387_l21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:30:53 2005
         (450 letters)



>mm_chr12_69425010_69425859
          Length = 850

 Score =  629 bits (325), Expect = 0.0
 Identities = 354/373 (94%), Gaps = 15/373 (4%)
 Strand = Plus / Minus

                                                                       
Query: 93  tatctatctttaaatcacgtgtatgtgtatggtttgtgcatgtgagtgcactgattgtga 152
           ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 850 tatctatctataaatcacgtgtatgtgtatgctttgtgcatgtgagtgcactgattgtga 791

                                                                       
Query: 153 gggactgaagaggggattgcattcctgtagctacagttacatgt---------------a 197
           ||||||||||||||||||||||||||||||||||||||||||||               |
Sbjct: 790 gggactgaagaggggattgcattcctgtagctacagttacatgtagctgtgagcttccca 731

                                                                       
Query: 198 agctgggtgctgggaatcgaacttgagttgtctgcaagagagcagagtaaactttggatc 257
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 agctgggtgctgggaatcgaacttgagttgtctgcaagagagcagagtaaactttggatc 671

                                                                       
Query: 258 cttgaaccatcttggcagccaaattgtctatacttttagtctccatatacagttaaccaa 317
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 cttgaaccatcttggcagccaaattgtctatacttttagtctccatatacagttaaccaa 611

                                                                       
Query: 318 ttaataataagcctcgtgtttattattatttagacacttttcttgaccttgaagtttcag 377
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 ttaataataagccttgtgtttattattatttagacacttttcttgaccttgaagtttcag 551

                                                                       
Query: 378 aacaatgtcctaccttttaaccagctctatacagatgcatagtaagctttcatgagtgat 437
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 aacgatgtcctaccttttaaccagctctatacagatgcatagtaagctttcatgagtgat 491

                        
Query: 438 gtccctatgtgat 450
           |||||||||||||
Sbjct: 490 gtccctatgtgat 478


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 850
Length adjustment: 10
Effective length of query: 440
Effective length of database: 840
Effective search space:   369600
Effective search space used:   369600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)