BAC Information

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BAC

Clone NameMSMg01-388B20
Chromosome12 (Build37)
Map Location 40,945,365 - 41,141,319
singlet/doubletdoublet
Overlap geneIfrd1, EG629820, Zfp277
Upstream geneLOC100043148, Arl4a, LOC100043606, Scin, Gm889
Downstream geneDock4, LOC638487, LOC100043157, LOC100043162
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-388B20.T7 (MSMg01no388_b20.b1)MSMg01-388B20.TJ (MSMg01no388_b20.g1)
ACCAG490686AG490687
length760753
length of high quality
(start - end)		547 (35 - 581)335 (316 - 650)
definitionCHROMAT_FILE: MSMg01no388_b20.b1 PHD_FILE: MSMg01no388_b20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:22 2005CHROMAT_FILE: MSMg01no388_b20.g1 PHD_FILE: MSMg01no388_b20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,140,776 - 41,141,319)(40,945,365 - 40,945,699)
sequence
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTTAC
TATGATTAAATACATTATTTAAATGTATTTAAATTAGGAAGCCTGGCTGG
ATACCATTTTGTGTAAGGTAAAATATAGTGTTGTAAAGTGCATAATTGAT
TTTAGCTCCTGAAGTGTTTCCCAACCCTGATTTGTCATTAGCAAGCATAA
GAAAAAGCCAAGTTATTGCTCCTACATTTAGTCTTTGTTAATAGTAATGA
CTCAAAAGTATAAAAGCCTTCAGATATTTGGATTTTTTTCCCCAGCATTT
TTTGAGGGGCTAGGCTAATCTTCCAAATAGTGTTTTGTCTGATTGTGACT
CAGCTTTTTTATTCTTGAACACTTCAGAAGCATACAGTGAAATCAGGGTT
GGTTGCTTGCTTGCTTGTTTTGGCACCTATGACTTAATAGAACAAAAATA
AGAAGCAGATATAATAGAAAATTGTAAACAGGATAAGTTAACCTTGTCTC
AAGCATTTGAACAGGCAGGTAGACCTCAAAACAAGATGCAGGCAGAAATT
TTAACTGGAGCCAGTCTTCCTGTTAATCAGGCTCTCCTCACTGTCCCAGA
GTATGGTACCTGAGACAGACAGCTTANGAGGGAAAGATTTGTTTGGGCTC
ANGATTTCGGGCCTTCCTTTCATGGCTCTCTGGGTTCCTTGCTCCGGCCA
AAGCAAGGCACAAGTGTGATGGAGATAGAGCATGCTATACCAACTGTTTA
CCGCGCGCAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCCCTATTTCCAACTCTCTATAGTAACACTAGGATT
ATAGATTTTTATGCCATCCAGACTATACACCGGCTTCAGGAACTCAGATC
TCCTATCTGCAAAAGCTGTCTAGCCATCTGCCAGTTAAAAAAAAATTTTC
CCGTTTTTTTTTTAAAAAAAAGGAACTCAGGCTGTGGTTGTATAAACCTT
TAATCCCAGTACTTGGAAGACAAAAGAGGCAAAGGTCTCTTGAATTTGAG
GCTGGCTACTTATGAGTGGTTCCAGGCCAGCCAGATTTACACAGTGAGAC
TCTGTCTCGAAGCTCAAATAAAATAAAATGAAGATTCTAACCATATCCTA
GAGTTTTAAAATACCAATGCTATTACCAAAAATAATTTAACTAGCATATT
TTCAGAATAAATTCATAATTGAGGGATCACATATTAACTTAAAAATTATG
AAGTAATGAATTACTTTGAGTCCTGAGCTAAAATGAGTCTCAAATTCTGA
CCATAAAGTGACCTGGGCAGCCCGATTTACCTGCACTTAATTTCCTTTTA
TTAGTAAAATCAAAGAATACATAACTAGTAATTTTAATATTACAGAGTAC
ATTCTGCANGAGAGATGCTAGGATTACCACCTGGACNGAATACCGAAAAA
TAAACTTGAACTAACCCACAGAAGTCAATCTCATTTACCCACCAATGTGC
CTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no388_b20.b1 MSMg01no388_b20.b1 CHROMAT_FILE:
MSMg01no388_b20.b1 PHD_FILE: MSMg01no388_b20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:22 2005
         (547 letters)



>mm_chr12_41140573_41141519
          Length = 947

 Score = 1029 bits (532), Expect = 0.0
 Identities = 541/544 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcttttactatgattaaatacattatttaaatgtatttaaattaggaagcctggc 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 ggaattcttttactaagattaaatacattatttaaatgtatttaaattaggaagcctggc 688

                                                                       
Query: 64  tggataccattttgtgtaaggtaaaatatagtgttgtaaagtgcataattgattttagct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 tggataccattttgtgtaaggtaaaatatagtgttgtaaagtgcataattgattttagct 628

                                                                       
Query: 124 cctgaagtgtttcccaaccctgatttgtcattagcaagcataagaaaaagccaagttatt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 cctgaagtgtttcccaaccctgatttgtcattagcaagcataagaaaaagccaagttatt 568

                                                                       
Query: 184 gctcctacatttagtctttgttaatagtaatgactcaaaagtataaaagccttcagatat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gctcctacatttagtctttgttaatagtaatgactcaaaagtataaaagccttcagatat 508

                                                                       
Query: 244 ttggatttttttccccagcattttttgaggggctaggctaatcttccaaatagtgttttg 303
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 507 ttggatttttttccccagcattttttaaggggctaggctaatcttccaaatagtgttttg 448

                                                                       
Query: 304 tctgattgtgactcagcttttttattcttgaacacttcagaagcatacagtgaaatcagg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tctgattgtgactcagcttttttattcttgaacacttcagaagcatacagtgaaatcagg 388

                                                                       
Query: 364 gttggttgcttgcttgcttgttttggcacctatgacttaatagaacaaaaataagaagca 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gttggttgcttgcttgcttgttttggcacctatgacttaatagaacaaaaataagaagca 328

                                                                       
Query: 424 gatataatagaaaattgtaaacaggataagttaaccttgtctcaagcatttgaacaggca 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gatataatagaaaattgtaaacaggataagttaaccttgtctcaagcatttgaacaggca 268

                                                                       
Query: 484 ggtagacctcaaaacaagatgcaggcagaaattttaactggagccagtcttcctgttaat 543
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 267 ggtagacctcaaaacaagatgcaggcagaaattttaactggagccagtcttcgtgttaat 208

               
Query: 544 cagg 547
           ||||
Sbjct: 207 cagg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space:   503169
Effective search space used:   503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no388_b20.g1 MSMg01no388_b20.g1 CHROMAT_FILE:
MSMg01no388_b20.g1 PHD_FILE: MSMg01no388_b20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:22 2005
         (335 letters)



>mm_chr12_40945165_40945899
          Length = 735

 Score =  632 bits (327), Expect = 0.0
 Identities = 333/335 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtggttccaggccagccagatttacacagtgagactctgtctcgaagctcaaataaaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtggttccaggccagccagatttacacagtgagactctgtctcgaagctcaaataaaata 260

                                                                       
Query: 61  aaatgaagattctaaccatatcctagagttttaaaataccaatgctattaccaaaaataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatgaagattctaaccatatcctagagttttaaaataccaatgctattaccaaaaataa 320

                                                                       
Query: 121 tttaactagcatattttcagaataaattcataattgagggatcacatattaacttaaaaa 180
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 tttaactagcatattttcagaataaattcataattgagggatcacacattaacttaaaaa 380

                                                                       
Query: 181 ttatgaagtaatgaattactttgagtcctgagctaaaatgagtctcaaattctgaccata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttatgaagtaatgaattactttgagtcctgagctaaaatgagtctcaaattctgaccata 440

                                                                       
Query: 241 aagtgacctgggcagcccgatttacctgcacttaatttccttttattagtaaaatcaaag 300
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagtgacctgggcagcctgatttacctgcacttaatttccttttattagtaaaatcaaag 500

                                              
Query: 301 aatacataactagtaattttaatattacagagtac 335
           |||||||||||||||||||||||||||||||||||
Sbjct: 501 aatacataactagtaattttaatattacagagtac 535


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 735
Length adjustment: 9
Effective length of query: 326
Effective length of database: 726
Effective search space:   236676
Effective search space used:   236676
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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