Query= MSMg01no388_l01.b1 MSMg01no388_l01.b1 CHROMAT_FILE:
MSMg01no388_l01.b1 PHD_FILE: MSMg01no388_l01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:04 2005
(424 letters)
>mm_chr12_5758470_5759293
Length = 824
Score = 797 bits (412), Expect = 0.0
Identities = 421/424 (99%)
Strand = Plus / Plus
Query: 1 gtgtttaaagcagaaacagattaaccattcaattgacaatagaacaatattgaaagacca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtgtttaaagcagaaacagattaaccattcaattgacaatagaacaatattgaaagacca 260
Query: 61 gcctcttcattgttctatgtgagaaaagaatgaaggatcaggtaagaaataaaacaggga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcctcttcattgttctatgtgagaaaagaatgaaggatcaggtaagaaataaaacaggga 320
Query: 121 tgcctgccacttagactaccgtgacagcaatggaagtttcgagatgggggatggagtgct 180
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcctgccacttagactacagtgacagcaatggaagtttcgagatgggggatggagtgct 380
Query: 181 ggtgtatcttggaggtgaaattggaagcaagcagtaatgaattccaggtgggaggcacca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtgtatcttggaggtgaaattggaagcaagcagtaatgaattccaggtgggaggcacca 440
Query: 241 ggaagagaagtgtcaaggatgagcctgcatttgttacttaagcagcagcagaggacagtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggaagagaagtgtcaaggatgagcctgcatttgttacttaagcagcagcagaggacagtg 500
Query: 301 ccattgtgtgtgataaagaagaatgaggaggggcgggggaagggcagcactcccttttag 360
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 501 ccattgtgtgtgataaagaagaatgaggaggggcgggggaaggggagtactcccttttag 560
Query: 361 acatgtcaattgagatcctgcgaagcatccaaatggatgtgtcaaggaagcgattggata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acatgtcaattgagatcctgcgaagcatccaaatggatgtgtcaaggaagcgattggata 620
Query: 421 aatg 424
||||
Sbjct: 621 aatg 624
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 824
Length adjustment: 9
Effective length of query: 415
Effective length of database: 815
Effective search space: 338225
Effective search space used: 338225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no388_l01.g1 MSMg01no388_l01.g1 CHROMAT_FILE:
MSMg01no388_l01.g1 PHD_FILE: MSMg01no388_l01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:04 2005
(615 letters)
>mm_chr12_5894328_5895342
Length = 1015
Score = 951 bits (492), Expect = 0.0
Identities = 537/552 (97%), Gaps = 4/552 (0%)
Strand = Plus / Minus
Query: 66 ctgttttgccattgaggatg-ctggaaaggcaggtcattgtcatggaacatcatagaagt 124
||||||||||| |||||||| || ||||| ||||||||||||||||||||||||||||||
Sbjct: 1013 ctgttttgccactgaggatgcct-gaaagacaggtcattgtcatggaacatcatagaagt 955
Query: 125 gagagcaaagagccagagggccaggatacctgctgtgagatagtaacttctaggcacaca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct: 954 gagagcaaagagccagagggccaggatacctgctgtgagatagtaacttctagacacgca 895
Query: 185 ttcattaaatgcactcatgaaaatgtaacaataaaacccattattttatatatgtaatat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 894 ttcattaaatgcactcatgaaaatgtaacaataaaacccattattttatatatttaatat 835
Query: 245 atgttaataatataaaatagaaagtctcagtctactatggctcaagagggaccaactagt 304
|||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||
Sbjct: 834 atgttaataatataaagtagaaagtctcagtctactatgactcaagagggtccaactagt 775
Query: 305 ctcttaagtttttctgagattcagatcaaaaggaattacgcctctattgtcatatacatt 364
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 774 ctcttaagtttttctgagattcagatcaaaaggaattaggcctctattgtcatatacatt 715
Query: 365 tctccctatgttacattttatttgacatcttttctagatagaggactaacagaagggagg 424
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 tcttcctatgttacattttatttgacatcttttctagatagaggactaacagaagggagg 655
Query: 425 atgtaatgttcttgaaagccaacacagaagtgcaatacacattcaaaaacctaagttatg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 atgtaatgttcttgaaagccaacacagaagtgcaatacacattcaaaaacctaagttatg 595
Query: 485 ggatagtgataaaccccatgaattgaccctcatatcaatgtcag-atttatgctttcctg 543
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 594 ggatagtgataaaccccatgaattgaccctcatatcaatgtc-gtatttatgctttcctg 536
Query: 544 tattacacattcctttgaaatccatttacacttatcactcacagcttttggcctttcaga 603
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 tgttacacattcctttgaaatccatttacacttatcactcacagcttttggcctttcaga 476
Query: 604 aaaaaaaatctc 615
||||||||||||
Sbjct: 475 aaaaaaaatctc 464
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space: 608025
Effective search space used: 608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
