Query= MSMg01no388_l10.b1 MSMg01no388_l10.b1 CHROMAT_FILE:
MSMg01no388_l10.b1 PHD_FILE: MSMg01no388_l10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:06 2005
(517 letters)
>mm_chr12_110746843_110747752
Length = 910
Score = 934 bits (483), Expect = 0.0
Identities = 503/513 (98%), Gaps = 7/513 (1%)
Strand = Plus / Plus
Query: 5 gaattcagcaaacatttctggagggtccattaagcgcttagcacagagctgggcgcccag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagcaaacatttctggagggtccattaagcgcttagcacagagctgggcgcccag 264
Query: 65 aaaacacagccagggagagaggtcattgccctgagctggaggcgcctataaacacatact 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaaacacagccagggagagaggtcattgccctgagctggaggcgcctataaacacatact 324
Query: 125 ggggaccctttgcgagagggagggggacccgagggagtgctgggtggctgtggactctgg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggggaccctttgcgagagggagggggacccgagggagtgctgggtggctgtggactctgg 384
Query: 185 agagctgcctgtttcaaagcaagaggaaagagagcagggtcccgaagaagaagcaaagcg 244
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 385 agagctgcctgtttcaaagcaagaggaaagagagcagggtcccgaagaag---caaagcg 441
Query: 245 tgcaagagccggcagctctaagcccgtaagacaggaactaggaactggctttgtgcacac 304
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tgcaagagccggccgctctaagcccgtaagacaggaactaggaactggctttgtgcacac 501
Query: 305 aaactctgtgtgacttacaggaggaagaagaagtctgagactcgcagatcccagggactt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 aaactctgtgtgacttacaggaggaagaagaagtctgagactcgcagatcccagggactt 561
Query: 365 gtagtcagattgactgttagagctcgatcgatcgtggtggtagggaggtagatgatgctg 424
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 562 gtagtcagattgactgttagagctcgatcg----tggtggtagggaggtagatgatggtg 617
Query: 425 ctgagatccaattagggagaaagaggaagagaggtatttccctcaggccacagaggaagg 484
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 618 ctgagatccaattagggagaaagaggaagagaggcatttccctcaggccacagaggaagg 677
Query: 485 gaagacaaccagctttaattccctttactgcct 517
|||||||||||||||||||||||||||||||||
Sbjct: 678 gaagacaaccagctttaattccctttactgcct 710
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 910
Length adjustment: 10
Effective length of query: 507
Effective length of database: 900
Effective search space: 456300
Effective search space used: 456300
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no388_l10.g1 MSMg01no388_l10.g1 CHROMAT_FILE:
MSMg01no388_l10.g1 PHD_FILE: MSMg01no388_l10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:06 2005
(564 letters)
>mm_chr12_110918338_110919301
Length = 964
Score = 1004 bits (519), Expect = 0.0
Identities = 555/571 (97%), Gaps = 7/571 (1%)
Strand = Plus / Minus
Query: 1 tccaagtagattttcagggcccctctaacccagttccatggacagacctcaagctgcccc 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 932 tccaagtagattttcagggcccctctgacccagttccatggacagacctcaagctgcccc 873
Query: 61 agccttgattctgaggaacatgatcaaagagcactcaagccctcgcctcgaagcacaggt 120
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 872 agccttgattctgaggaacatgatcaaagagcactcaagcccttgcctcgaagcacaggt 813
Query: 121 ccacaagggacgggcgtagacctatgggcctccatccagag-------cttagcaaggcg 173
||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 812 ccacaagggacgggcgtagacctatgggcctccatccagagcttagctcttagcaaggca 753
Query: 174 tcgggattgacctcagatttctggataattggcgttcatggagtatcactcaaacgccac 233
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 752 tcgggattgacctcagatttctggatacttggcgttcatggagtatcactcaaacgccac 693
Query: 234 tttatttcatcatcggtcctggatggggccccctctctccctagccaactgcacacctta 293
|| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 cagatctcatcattggtcctggatggggccccctctctccctagccaactgcacacctta 633
Query: 294 attgcttagtgggtgctgagggcagagctctgatcacagggtattagaacattctgtgtg 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 attgcttagtgggtgctgagggcagagctctgatcacagggtattagaacattctgtgtg 573
Query: 354 gcagcccctgaagagcagccactagaagccaaaaattacaaccaactattgtactaatgg 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 gcagcccctgaagagcagccactagaagccaaaaattacaaccaactattgtactaatgg 513
Query: 414 cctaagagtcttctgctactgcactaaggcagaaacactctcaccactacacatacctac 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 cctaagagtcttctgctactgcactaaggcagaaacactctcaccactacacatacctac 453
Query: 474 aagctcataccttaagtgaggaagatcaaaatgccgcctctcagtcagcagggctcaggc 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 aagctcataccttaagtgaggaagatcaaaatgccgcctctcagtcagcagggctcaggc 393
Query: 534 tgtcacggtgaagaccgaagtgggttctggt 564
|||||||||||||||||||||||||||||||
Sbjct: 392 tgtcacggtgaagaccgaagtgggttctggt 362
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space: 528516
Effective search space used: 528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
