BAC Information

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BAC

Clone NameMSMg01-388L18
Chromosome12 (Build37)
Map Location 87,172,883 - 87,333,368
singlet/doubletdoublet
Overlap geneTtll5
Upstream geneLtbp2, 1110018G07Rik, Fcf1, Ylpm1, Prox2, Dlst, Rps6kl1, LOC100042021, Pgf, Eif2b2, Mlh3, Acyp1, 2810002I04Rik, Nek9, Tmed10, LOC100042549, LOC667119, Fos, EG667124, Jundm2, LOC100042073, Batf, BC011209, 0610007P14Rik
Downstream geneTgfb3, 1700019E19Rik, 1700020O03Rik, LOC100042112, Esrrb, LOC667191, Vash1, Angel1, EG627607, LOC100042650, 6430527G18Rik, 2310044G17Rik, Zdhhc22
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-388L18.T7 (MSMg01no388_l18.b1)MSMg01-388L18.TJ (MSMg01no388_l18.g1)
ACCAG491158AG491159
length771741
length of high quality
(start - end)		498 (37 - 534)569 (70 - 638)
definitionCHROMAT_FILE: MSMg01no388_l18.b1 PHD_FILE: MSMg01no388_l18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:07 2005CHROMAT_FILE: MSMg01no388_l18.g1 PHD_FILE: MSMg01no388_l18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,172,883 - 87,173,376)(87,332,830 - 87,333,368)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAGT
TTTGGTTTTCCATGCTGAGGCTATTTTGACAAAGGACAACAATATTCGAG
TAATTGGAGGTAGGTGTAACCTCTGCTATAGAAAGGGGATCTGGGTATGA
CCCTGACCACTCTAGAACAAGTTACTATGACACAGACAGAGAGGCCTTGG
CCATGGAACACGCATTGAGCTGTTACTTCAAATATTATTCATAGTTTCTT
AAATTGTTTCCTGAGTTTCTCAAAATGATGTGTATGTGTTTATTTTTCAG
GTTATATTTACTTAACATGTCCCAGAGTTTACCATTTTGACCACTTTAGA
GTGTGCAATCAATTGGTGTTTGGGTCATTCATATTTATCACCGGTGTCTA
GCTTAAGGACATTTGCATCACTTGGGCAGCCACTCCCTCCTCTCTATACT
GCCAGTGCCTTATGACTGCTAATCTTTCTGTTTCTATAGATTTTCCGATT
TTGCATAGCATAAAATTCAGTGTTTCTCAACCTGTGGGGTGTGGCCCCTT
TGAAAAACTGTGTCCAAAAATATTTACATTAACAGTAGCACCATTACAGT
TATCAAATAGCAACCAAAATAATTTTATGGGTGGGGGGCCCCCCCCACAT
GAAGGACTGTATAAAAAAGTTGCCGCCTTAAGGAACGTTGGAGACCCCTA
ATGGGTGCCCCCTGTATGAAGGCCTTGGTGTTGGGCTTCTCTTCACAACA
CGGTTTTTCCCAGCCCCTCCG

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAAGAGGGAATTCCAGTGGAAGACTGAAAACT
ACAAAGAAATATTCCCACTATTAATGTTACTATCCTTCTATTCTTTCCCC
AACCTGTGGCTTCCTTTTACTGCCACCAGAGCTCCAGACTTCTCTGGGGA
TGAGAACAAGCAGGATATAGAAACAGAAAGTGAGTCATTCTGCAGGCAGA
AGACCCGCTGCTGCAGTCAGCACGGTGCAGTCCTTTGTGACAGCATCAGA
CGTGAAGTCAAGTTCTGCGTGTGCTAAAACAAACAGCCATCTGGACCATT
GTTGCACTCAGCACACAAACAAGCCCGTCATGTCCCTAATGTCATATGTC
ATAATGTCATAAAGCCTCTAGAAGGAAATACATCAAGATGTCTTTGAAAC
CTTATGGTCAGCAAAGACTTCTTAGAATTCTAATGTTCTAATTAATAAAA
GAAAAGTTTAGAAATTGAACTTTAATAAAATCAAACAAGACATCATTAAT
GCTCTTGGCATGGTGGGGACCTGTAATCCTGGCACTTGGGAAGAGTCCAG
AAACAGCCTTAGTTACATAGTGAGCTTGAATCTAGCCTCTACAAGAGGCC
CTATCTCAAGCAATAAAAGCAAGCAAAGGACATCACTGAGAGAATAAGTA
AGTCATACTGTGGGGACGAGTATTTGCAGTTCATATAATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no388_l18.b1 MSMg01no388_l18.b1 CHROMAT_FILE:
MSMg01no388_l18.b1 PHD_FILE: MSMg01no388_l18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:07 2005
         (498 letters)



>mm_chr12_87172679_87173576
          Length = 898

 Score =  948 bits (490), Expect = 0.0
 Identities = 493/494 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccagttttggttttccatgctgaggctattttgacaaaggacaacaatattcgag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagttttggttttccatgctgaggctattttgacaaaggacaacaatattcgag 264

                                                                       
Query: 65  taattggaggtaggtgtaacctctgctatagaaaggggatctgggtatgaccctgaccac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taattggaggtaggtgtaacctctgctatagaaaggggatctgggtatgaccctgaccac 324

                                                                       
Query: 125 tctagaacaagttactatgacacagacagagaggccttggccatggaacacgcattgagc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tctagaacaagttactatgacacagacagagaggccttggccatggaacacgcattgagc 384

                                                                       
Query: 185 tgttacttcaaatattattcatagtttcttaaattgtttcctgagtttctcaaaatgatg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgttacttcaaatattattcatagtttcttaaattgtttcctgagtttctcaaaatgatg 444

                                                                       
Query: 245 tgtatgtgtttatttttcaggttatatttacttaacatgtcccagagtttaccattttga 304
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 445 tgtatgtgtttatttttcaggttatgtttacttaacatgtcccagagtttaccattttga 504

                                                                       
Query: 305 ccactttagagtgtgcaatcaattggtgtttgggtcattcatatttatcaccggtgtcta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ccactttagagtgtgcaatcaattggtgtttgggtcattcatatttatcaccggtgtcta 564

                                                                       
Query: 365 gcttaaggacatttgcatcacttgggcagccactccctcctctctatactgccagtgcct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gcttaaggacatttgcatcacttgggcagccactccctcctctctatactgccagtgcct 624

                                                                       
Query: 425 tatgactgctaatctttctgtttctatagattttccgattttgcatagcataaaattcag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tatgactgctaatctttctgtttctatagattttccgattttgcatagcataaaattcag 684

                         
Query: 485 tgtttctcaacctg 498
           ||||||||||||||
Sbjct: 685 tgtttctcaacctg 698


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space:   433344
Effective search space used:   433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no388_l18.g1 MSMg01no388_l18.g1 CHROMAT_FILE:
MSMg01no388_l18.g1 PHD_FILE: MSMg01no388_l18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:07 2005
         (569 letters)



>mm_chr12_87332830_87333798
          Length = 969

 Score = 1027 bits (531), Expect = 0.0
 Identities = 537/539 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagagggaattccagtggaagactgaaaactacaaagaaatattcccactattaatgtta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 aagagggaattccagtggaagactgaaaactacaaagaaatattcccactattaatgtta 480

                                                                       
Query: 61  ctatccttctattctttccccaacctgtggcttccttttactgccaccagagctccagac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 ctatccttctattctttccccaacctgtggcttccttttactgccaccagagctccagac 420

                                                                       
Query: 121 ttctctggggatgagaacaagcaggatatagaaacagaaagtgagtcattctgcaggcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 ttctctggggatgagaacaagcaggatatagaaacagaaagtgagtcattctgcaggcag 360

                                                                       
Query: 181 aagacccgctgctgcagtcagcacggtgcagtcctttgtgacagcatcagacgtgaagtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 aagacccgctgctgcagtcagcacggtgcagtcctttgtgacagcatcagacgtgaagtc 300

                                                                       
Query: 241 aagttctgcgtgtgctaaaacaaacagccatctggaccattgttgcactcagcacacaaa 300
           |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 aagggctgcgtgtgctaaaacaaacagccatctggaccattgttgcactcagcacacaaa 240

                                                                       
Query: 301 caagcccgtcatgtccctaatgtcatatgtcataatgtcataaagcctctagaaggaaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 caagcccgtcatgtccctaatgtcatatgtcataatgtcataaagcctctagaaggaaat 180

                                                                       
Query: 361 acatcaagatgtctttgaaaccttatggtcagcaaagacttcttagaattctaatgttct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 acatcaagatgtctttgaaaccttatggtcagcaaagacttcttagaattctaatgttct 120

                                                                       
Query: 421 aattaataaaagaaaagtttagaaattgaactttaataaaatcaaacaagacatcattaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 aattaataaaagaaaagtttagaaattgaactttaataaaatcaaacaagacatcattaa 60

                                                                      
Query: 481 tgctcttggcatggtggggacctgtaatcctggcacttgggaagagtccagaaacagcc 539
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59  tgctcttggcatggtggggacctgtaatcctggcacttgggaagagtccagaaacagcc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space:   536081
Effective search space used:   536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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