BAC Information

Click to search

BAC

Clone NameMSMg01-389K24
Chromosome12 (Build37)
Map Location 116,578,935 - 116,579,389
singlet/doubletsinglet
Overlap geneIgh
Upstream geneIghv1-1, Ighv13-2, EG435321, Ighv6-3, EG628398, EG639510, Ighv6-6, EG432701, EG629849, Ighv1-2, Ighv10-1, Ighv1-3, Ighv1-4, Ighv10-2, EG668469, EG380809, Ighv1-6, EG668474, Ighv10-4, Ighv1-8, Ighv15-2, Ighv1-9, Ighv1-10, Ighv1-11, EG629860, Ighv1-13, Ighv1-14, Ighv1-15, EG629866, Ighv1-17-1, Ighv1-17, Ighv1-18, EG668493, Ighv1-19, EG668497, Ighv1-21-1, Ighv1-21, Ighv1-22, Ighv1-23, Ighv1-24, Ighv1-25, Ighv1-26, Ighv1-27, Ighv1-28, Ighv1-29, Ighv1-30, Ighv1-31, Ighv1-32, Ighv1-33, Ighv1-34, EG668515, Ighv1-36, Ighv1-37, Ighv1-38, Ighv1-39, Ighv1-40, Ighv1-41, EG629906, EG629908, Ighv1-44, Ighv1-45, Ighv1-46, Ighv1-47, Ighv8-3, EG629919, Ighv1-48, Ighv1-49, EG640506, Ighv1-50, Ighv1-51, Ighv1-52, Ighv1-53, EG629930, EG668534, EG211331, Ighv1-55, EG634662, Ighv1-56, EG629936, Ighv8-7, Ighv1-57, Ighv8-8, Ighv1-58, EG432708
Downstream geneIghv1-60, Ighv1-61, Ighv1-62, EG668544, EG238448, EG668549, EG432709, EG668552, Ighv1-63, Ighv1-64, Ighv8-10, Ighv1-65, EG668554, EG636462, LOC217924, Ighv1-66, EG435328, Ighv1-68, LOC435329, EG668563, Ighv1-69, Ighv8-12, LOC619863, EG638634, EG619886, Ighv1-72, EG668575, EG668577, EG668582, Ighv1-75, Ighv1-77, Ighv1-78, GA_x5J8B7W27DS-1519-2216, Ighv1-79, LOC668586, Ighv1-80, Ighv1-81, Olfr241-ps1, Ighv1-83, EG434609, LOC668595, EG668597, EG668599, Zfp386, Vipr2, LOC676058, Wdr60, LOC100042963, D12Ertd551e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389K24.T7 (MSMg01no389_k24.b1)MSMg01-389K24.TJ (MSMg01no389_k24.g1)
ACCAG491883AG491884
length780757
length of high quality
(start - end)		443 (49 - 491)459 (86 - 544)
definitionCHROMAT_FILE: MSMg01no389_k24.b1 PHD_FILE: MSMg01no389_k24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:22 2005CHROMAT_FILE: MSMg01no389_k24.g1 PHD_FILE: MSMg01no389_k24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:23 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NNAATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCACAGAGACCAGGATGGCCTCAAACTCAGATCTACATGCCTCT
GCCTCCTATGTGATGGGATTAAACAGTTGCCTTTGTCTATGCTGACGCAG
CCACCACCACCACTGGAAAGAAAAAAAATTAAAATCAATATCACCCAACT
AACCATATCATGGAACTCTATGCTAATATTATAGTGTAAGGAAAGCTTTT
CAATTATGGATGAATAAATAAACATCAAAATGTCCTTCTCCAATCAGAGG
CTAAATTTCTGAAAGTCCTTAAAATCTAGCAATAACAAAGACAGAGAAAA
CATAGTAACTGGAGATTAGGCAAAATAGGACAAAACATTCATGTTAAAAA
CAAAACAGTAAACATCCTAGAAAACACTTCCAATCTTATGGTTTAGCTTT
TTCATATCCTTCATTGGCCCTCTATGCTAAAGGCTTGATTGCCAACCTGT
GAGTGCTATTGGAGGTGGGAAGGTTTTAGGATATAGGGCCTACTGAGCGG
AACGATGTTATAGCAATGAGAGGGCCCTGACCATAAAAGAAAACTGCGGC
CCCTGATTCCTACTCATTTTCCTTTTTTGAAGAAAACAGCCCTTCTCCAC
CTTTTGCCCCCAATATGAAATACTATTGCCCCGAAAACCCCCAAAAACCC
TGGTGTAAAACTGAACCAAAGGACCTTTTCCTTTTTTTCCTCTCCCCCCA
AACTTTTTTTGCCCCACTCTTTCCTCCTCC

NNNNNNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATGC
CAAATGGCTGAGAAACACCTGAAAAAATGTCCAACATCCTTAATCATTAG
GGAAATACAAATCAAAATAACCCTGATATTCCATCTCACAACAGTCAGAA
TGGCTAAGATCAAAAATTCAGGTGACAACAGATGCTGTTGAAGATGTGGA
GAAAGACGAACACTCCCCCATTGTTGATGTGATTGCAAGCTTGTACAACC
AATCTAGAAATCAGTCTGGTGGTTCCTCAGAAAATTGGACATGGTACTAC
TGGAGGATCCCACAATACCTCTCCTGGGCATATATTCAGAAGATGTTCCA
ACTAGTAAGATAGAAACATGCTCCACTATATTCATAGCAGGCTTATTTAT
AATAGCCAAAATCTGGAAAGAACCCAGATGCTCCTCAACAGAGGAATGGA
TACAAAAAAAATGTGGTACATTAACACAATTGAATACTACTCAGCTATTA
AAAAGAATGATTCCCCAATGAAGAGTTACAGAAAGGAATGAACAAGTTGC
AGGTGTTTGCAACCCCACAGGAAGAACCAAAATATCAACCAACCAGACCT
TGTCAGAACTCCCAGGGACTAAGTCATCAAACAAAGATTACACATGGGCT
CCTCTGCATATGTAACAAAGGATGGCCTTTGTCTGCATCTATCCCCCCAA
AATCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_k24.b1 MSMg01no389_k24.b1 CHROMAT_FILE:
MSMg01no389_k24.b1 PHD_FILE: MSMg01no389_k24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:22 2005
         (443 letters)



>mm_chr12_116578748_116579589
          Length = 842

 Score =  485 bits (251), Expect = e-141
 Identities = 400/461 (86%), Gaps = 27/461 (5%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcacag---agaccaggatggcctcaaactcagatctacatgcctctgcctccta 60
           |||| ||||||   |||||||| |||||||||||||||||| || ||||| |||||||||
Sbjct: 188 ggaactcacagtgtagaccaggctggcctcaaactcagatcaacctgcctttgcctccta 247

                                                                       
Query: 61  tgtga-tgggattaaa-cagttgcctttgtctatgctgacgcag---------ccaccac 109
           ||| | |||||||||| ||||||||  ||||||||||||| |||         |||||||
Sbjct: 248 tgt-attgggattaaagcagttgccagtgtctatgctgacacagccacctccaccaccac 306

                                                                       
Query: 110 caccac---tggaaagaaaaaaaattaaaatcaatatcacccaactaaccatatcatgga 166
           ||||||   | |||| ||||||||||||||||| ||||||||||||||  ||||||||||
Sbjct: 307 caccactaatagaaa-aaaaaaaattaaaatcagtatcacccaactaagaatatcatgga 365

                                                                       
Query: 167 actctatgctaatattatagtgta----aggaaagcttttcaattatggatgaataaata 222
           | |||||||||||||| |||||||       | |||||||||||||||| ||||||||||
Sbjct: 366 aatctatgctaatattgtagtgtactcc---atagcttttcaattatggctgaataaata 422

                                                                       
Query: 223 aacatcaaaatgtccttctccaatcagaggctaaatttctgaaagtccttaaaatctagc 282
           ||||||||||  || |||||||||||||||||||||||||||||| || |||| | ||||
Sbjct: 423 aacatcaaaaaatctttctccaatcagaggctaaatttctgaaaggccctaaagtttagc 482

                                                                       
Query: 283 aataacaaagacagagaaaacatagtaactggagattaggcaaaataggacaaaacattc 342
           ||||||| || |  |||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct: 483 aataacagagcctcagaaaacatagtaactagagattaggcaaaatagtaccaaacattc 542

                                                                       
Query: 343 atgttaaaaacaaaacagtaaacatcctagaaaacacttccaatcttatggtttagcttt 402
           ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 543 atgtt-aaaacaagacagtaaacatcctagaaaacacttccaatcttatggtttagcatt 601

                                                    
Query: 403 ttcatatccttcattggccctctatgctaaaggcttgattg 443
           ||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 602 ttcatatccctcattggccctctatggtaaaggcttgattg 642


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 842
Length adjustment: 10
Effective length of query: 433
Effective length of database: 832
Effective search space:   360256
Effective search space used:   360256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |