Query= MSMg01no390_e08.b1 MSMg01no390_e08.b1 CHROMAT_FILE:
MSMg01no390_e08.b1 PHD_FILE: MSMg01no390_e08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:08 2005
(405 letters)
>mm_chr12_71092472_71093275
Length = 804
Score = 752 bits (389), Expect = 0.0
Identities = 401/405 (99%), Gaps = 1/405 (0%)
Strand = Plus / Minus
Query: 1 tatgccaaggaaagactatttctggctaaagataaggtgaaatcttagaagataaaagtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 tatgccaaggaaagactatttctggctaaagataaggtgaaatcttagaagataaaagtt 545
Query: 61 tctccatccagaaaagcgaaacagaaagacctataacagacagaggaagtcagaggacag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 tctccatccagaaaagcgaaacagaaagacctataacagacagaggaagtcagaggacag 485
Query: 121 gaatggcaagagtaagacttggtctgactttcagactgttggatgaactctaaatccagg 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 gaatgacaagagtaagacttggtctgactttcagactgttggatgaactctaaatccagg 425
Query: 181 cagtaacagtaatctacaaagcagccttaaactgctatgatgaaatgcctgaggcagcta 240
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 cagtaacagtaatcta-aaagcagccttaaactgctatgatgaaatgcctgaggcagcta 366
Query: 241 actcacaagggataggaatcttgttgggttccgttttagatgttcataggcagtagctca 300
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 actcacaagggaaaggaatcttgttgggttccgttttagatgttcataggcagtagctca 306
Query: 301 atcccgatgggtgatagcacacaaggcaggaaggaattcacacagtgtctgtctactagc 360
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 atcccgatgagtgatagcacacaaggcaggaaggaattcacacagtgtctgtctactagc 246
Query: 361 tctcatctagctaggatggagggatgggaggggaaagaaggaagg 405
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tctcatctagctaggatggagggatgggaggggaaagaaggaagg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 804
Length adjustment: 9
Effective length of query: 396
Effective length of database: 795
Effective search space: 314820
Effective search space used: 314820
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no390_e08.g1 MSMg01no390_e08.g1 CHROMAT_FILE:
MSMg01no390_e08.g1 PHD_FILE: MSMg01no390_e08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:08 2005
(490 letters)
>mm_chr12_70898214_70899104
Length = 891
Score = 897 bits (464), Expect = 0.0
Identities = 481/490 (98%), Gaps = 7/490 (1%)
Strand = Plus / Plus
Query: 1 agccacagacatcggaagaggacactatttagcaacttgaggaaattcctcacatctgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agccacagacatcggaagaggacactatttagcaacttgaggaaattcctcacatctgtt 260
Query: 61 tccccctctttaagtgaatttggaaagggcattgttttgggggcacataaaaaggatcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccccctctttaagtgaatttggaaagggcattgttttgggggcacataaaaaggatcct 320
Query: 121 tagtcattgccatgagaatgcttacatctcaggctcagtgtccatgttttctctaatcta 180
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagtcattgccatgaggatgcttacatctcaggctcagtgtccatgttttctctaatcta 380
Query: 181 tactcaaaccctacaggccttcaccagctttagtagttactaaacagacagaagtagttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tactcaaaccctacaggccttcaccagctttagtagttactaaacagacagaagtagttg 440
Query: 241 tctgctctattt----agttgctgaggccctgagatgccaatcagtatggaataggtcag 296
||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctgctcta---cagcagttgctgaggccctgagatgccaatcagtatggaataggtcag 497
Query: 297 tccctctgccacctgggtggatccaaggttcaaactcagagctatctgtttccaaatgaa 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tccctctgccacctgggtggatccaaggttcaaactcagagctatctgtttccaaatgaa 557
Query: 357 gtcagaacacctaagaataccttgggaatcatcttctgcccttgacctccagggcctctt 416
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 gtcagaacacctaagaacaccttgggaatcatcttctgcccttgacctccagggcctctt 617
Query: 417 gactctgacactagggcagacctgatggtcaaatctcaacatgcaacaacttgaagagaa 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 gactctgacactagggcagacctgatggtcaaatctcaacatgcaacaacttgaagagaa 677
Query: 477 gctagatcca 486
||||||||||
Sbjct: 678 gctagatcca 687
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 891
Length adjustment: 10
Effective length of query: 480
Effective length of database: 881
Effective search space: 422880
Effective search space used: 422880
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
