BAC Information

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BAC

Clone NameMSMg01-390E11
Chromosome12 (Build37)
Map Location 4,804,830 - 4,805,047
singlet/doubletsinglet
Overlap genenone
Upstream geneDnmt3a, LOC668289, Pomc1, C030014M07Rik, C330021A05Rik, Adcy3, Cenpo, 2410017P09Rik, Ncoa1, LOC100041995, LOC100042005, LOC100042014, Itsn2, 4930417G10Rik, A830093I24Rik, Pfn4, EG626534
Downstream gene0610009D07Rik, Fkbp1b, BC068281, Gm1964, Ubxd4, Atad2b, LOC668332, Klhl29, 2810032G03Rik, LOC435292, LOC100042095
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-390E11.T7 (MSMg01no390_e11.b1)MSMg01-390E11.TJ (MSMg01no390_e11.g1)
ACCAG492332AG492333
length730743
length of high quality
(start - end)
244 (84 - 327)204 (336 - 539)
definitionCHROMAT_FILE: MSMg01no390_e11.b1 PHD_FILE: MSMg01no390_e11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:34:08 2005CHROMAT_FILE: MSMg01no390_e11.g1 PHD_FILE: MSMg01no390_e11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:34:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCCNCCCCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGG
ATCCGCGGAATTCTTTGTTTTGCTCTGAGCCCCATTTTTTAATGGGGTTA
TTTGATTTTCTGGAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATAT
TAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTG
GTGGTCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAGCTTTGC
AACTTTATGAGGTTCCATTTATCGATTCTCAGTCTTAGGATACCCAAGAT
ATAAGATACAATTTGCTAAACGCATGTTTCTCTTGAAGAACAAAGACCAA
AGTGTGGACACTTTGCCCCTTCTTAGAATTGGGAACAAAACACCCATGGA
AGGAGTTACAGAGACAAAGTTTGGAGCTGTGACGAAAGGATGGACCATCT
AGAGACTGCCATATCCGGGGATCCATCCCATGATCAGCTTCGAAACGCTG
ACACCATTGCATACACTAACAAGATTTTGCTGAAAGGACCCAGATATAGC
TGTCTCTTGTGAGACTATGCCGGGGCCTAGCAAACACAGAAGTGGATGCT
CACAGTCAGCTATTGGATGGATCACAGCGCCCCCGATGGAGGAGCTAGAT
AAAGTACCCCAGGAGCTAAAGGGATCCTGCACCCTATAGGTAGAACACCT
TTATGAATTAACCGTACCCCGGAGCTCTTG
TCCCCCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTCCCAAAAAATTCAAGAGAACACAGCCCT
GAGGCCAAATGGAGTTAAGAGCAGCCCAAATGAAACATAGTACTAACTCA
GGGTAATCTACAGGAAAGTAGATTCTAATAGCATAGAAGGTAGATATCTG
CCCAGCTTTTGTGCTGTTTAAGGTTTATTGTAAATATGAAGGTTGTGTGT
GTCTTTTATTTGGGAACTGAATGGTCAAAGGCAGGGTAGAAACCCCAGGT
TGGGGTTAAAAATTCCCACAAGAAGCACTTTTTCTGGGGCCTCTTGTGTA
TCAGCTGCTCAATGAAGCCATTGCTAGTCGTCCTTCTCACCAGGGGTTAT
TCTTTCAAGATGTTGGATCCTGTGGTGAGTACTTATGCTGATATCCTCTC
TGTGTGTGTGTGTGTGTGTGTGTCTGTGTGTGTGTCTCTGTGTGTGTTTG
TCTGTGTGTGTGTGTGTCTGTGTGTGTCTGTGTGTGTGTGTGTCTGCGCG
CGCGTGTGTATTTGTGCGCGAGTACCCCACAGATTGTCGACTCTCTTGTG
CATCCCACCACCTCTTATTCCACGTGGTCCTTTTTTCCTTCTGTTAACCC
TAACTCCCGAAAACTCGTTTTTCTCTATTCGTCTCAAAGCCTTGGTTCCC
CTTGGATACTCTCTAATTCCCATAGGGAGCTCGCAACTCTTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no390_e11.g1 MSMg01no390_e11.g1 CHROMAT_FILE:
MSMg01no390_e11.g1 PHD_FILE: MSMg01no390_e11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:08 2005
         (204 letters)



>mm_chr12_4804734_4805337
          Length = 604

 Score =  333 bits (172), Expect = 6e-96
 Identities = 200/218 (91%), Gaps = 14/218 (6%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggggcctcttgtgtatcagctgctcaatgaagccattgctagtcgtccttctcaccaggg 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 314 ggggcctcttgtgtatcagctgctcaatgaagccattgctagtcatccttctcaccaggg 255

                                                                       
Query: 61  gttattctttcaagatgttggatcctgtggtgagtacttatgctgatatcctctctgtgt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 254 gttattctttcaagatgttggatcctgtggtgagtacttatgctgatatcctctgtgtgt 195

                                                                       
Query: 121 gtgtgtgtgtgtgtgtgtctgtgtgtgtgt--------------ctctgtgtgtgtttgt 166
           |||||||||||||||||| |||||||||||              ||||||||||||||||
Sbjct: 194 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctctgtgtgtgtttgt 135

                                                 
Query: 167 ctgtgtgtgtgtgtgtctgtgtgtgtctgtgtgtgtgt 204
           |||||||| |||||||||||||||||||||||||||||
Sbjct: 134 ctgtgtgtatgtgtgtctgtgtgtgtctgtgtgtgtgt 97


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 87
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 204
Length of database: 604
Length adjustment: 8
Effective length of query: 196
Effective length of database: 596
Effective search space:   116816
Effective search space used:   116816
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)