BAC Information

Click to search

BAC

Clone NameMSMg01-391H08
Chromosome12 (Build37)
Map Location 41,164,653 - 41,344,207
singlet/doubletdoublet
Overlap geneZfp277, Dock4
Upstream geneLOC100043148, Arl4a, LOC100043606, Scin, Gm889, Ifrd1, EG629820
Downstream geneLOC638487, LOC100043157, LOC100043162, Lrrn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391H08.T7 (MSMg01no391_h08.b1)MSMg01-391H08.TJ (MSMg01no391_h08.g1)
ACCAG493226AG493227
length752797
length of high quality
(start - end)
230 (67 - 296)244 (78 - 321)
definitionCHROMAT_FILE: MSMg01no391_h08.b1 PHD_FILE: MSMg01no391_h08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:41 2005CHROMAT_FILE: MSMg01no391_h08.g1 PHD_FILE: MSMg01no391_h08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,164,653 - 41,164,882)(41,343,965 - 41,344,207)
sequence
GGGCCGCTAAACGACTCACATATCCCACAACATCCGCGGAATTCTCTTTA
TTCTCTTGTCCATACAGAAGGAAGCCAAGTAGGTGGCCCTCAATCACTAC
TCAAACAAGCCCAAATGCCATCACAACATGATACTGTCTCTGCGACTTAG
TGCAAACGGAATATGTGACAGTCCCTAGATTGATGGGCTTTTCTAATACC
AGGGAGGGACTTGTCCTTGCAGAGCTTTGCTGACCTCCCTTGTTTTCTTT
TAGTTTGAAGCTGGCTGTGTAAGTGACAGAATGCTTGCCTAGCATGCAGG
ATGCTCTGTTTTCTTTTATCAGCAATGCAAAACAAACAGACTGGTACCTC
CCAGGGCTGGGGAGGCAGAGTGTCCAAATTCCAGGCTGGCAAGCCTACAC
ACTGACCTCCATAGTGAACTCTGTCTTGAAACCCACACACCTAATTAATA
AGTAAAGGCATAGTCCGAGTTCTGAAGCACCACCAGTGTGACACCACATA
CGAGGTCCTCTGATCTCCCGCCCACCGAAATACCCCCCGCCACCCCCCTT
TGCACGCAACACCCCTTCTCCAGGTAAGGGCCCACCACCCCATGTGTTCC
CCCCCCCTTTTTTTTTTCATCCCCCCCCCCCCCTCTCCTTTTTTTCTCCC
CCCCCCTCCCTTCCCCCCTTTTTTTTTTTTCCCCCCCCCCTTCCCCCATT
TCTCCCCCCCCATTTTTCTTTCCTCCCCCCTCTCTCTCCCCCCTCCCCCC
CC
NTTCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGCCTTCATCTTCCTGGTAAAAA
GATCTGCAACATATCACCAAGTTGTGGTCTGAACTATGATGCTACTAGTC
TCAGATTCTGAGACTTCACAGAATTCACAGAATTCGATTTACTACCAAAA
TGTAACTCGAGGTCTTTTTTCTTTTTGTTTCTCAACAAAACAGACAACTG
CCCCCTCAAAATTCAATACCCAACTTTAAGTGAGATAGCTATAAAATCTT
CCGTGCCAGTCAGAGACGGGTANGTTGTAGGTGCTGGCTGTGAACCATCT
ATAGACATTCTCTTGCTCCTTAGACCACACTTCACACTGGCCATTTCTCT
CTCTGAACGTCTGGCTGGCTCTTGTTTTGTCATGAATATATTCATATGTG
AGTTTCTTACCTTATATGGGGACCATGACGTGACCGATCACACGTTCACG
AACACATTGAACCCCTTGATCTCCTTCACTTCTCTCCCCCACACCGGTCC
TAACCCACTTGTCTCCACCATTGTCTCTATTTCCTTCTCCTCCCCGCCCT
TTTTTTTATCTTTTCTCCCCTTTTCTCCCCTCCCTTCTCTTCTTTCCTCC
CCTTTTCTTGTTCCCCTTTTTTTTTTCCCCTCTTTTTCTCCCCCCCCTTT
CCCTTTTCCCTTTCTTCCCACTTTTCTCCCTCCTCCACCTCCTTCCTCCT
CTTTTTCCCCCTTATCTTTCCTCTATCTCCCCCCTTTTTCTTCTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_h08.b1 MSMg01no391_h08.b1 CHROMAT_FILE:
MSMg01no391_h08.b1 PHD_FILE: MSMg01no391_h08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:41 2005
         (230 letters)



>mm_chr12_41164453_41165082
          Length = 630

 Score =  429 bits (222), Expect = e-125
 Identities = 228/230 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaaggaagccaagtaggtggccctcaatcactactcaaacaagcccaaatgccatcacaa 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaaggaagccaagtaggtggtcctcaatcactactcaaacaagcccaaatgccatcacaa 260

                                                                       
Query: 61  catgatactgtctctgcgacttagtgcaaacggaatatgtgacagtccctagattgatgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catgatactgtctctgcgacttagtgcaaacggaatatgtgacagtccctagattgatgg 320

                                                                       
Query: 121 gcttttctaataccagggagggacttgtccttgcagagctttgctgacctcccttgtttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcttttctaataccagggagggacttgtccttgcagagctttgctgacctcccttgtttt 380

                                                             
Query: 181 cttttagtttgaagctggctgtgtaagtgacagaatgcttgcctagcatg 230
           ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttttagtttggagctggctgtgtaagtgacagaatgcttgcctagcatg 430


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 230
Length of database: 630
Length adjustment: 9
Effective length of query: 221
Effective length of database: 621
Effective search space:   137241
Effective search space used:   137241
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no391_h08.g1 MSMg01no391_h08.g1 CHROMAT_FILE:
MSMg01no391_h08.g1 PHD_FILE: MSMg01no391_h08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:41 2005
         (244 letters)



>mm_chr12_41343765_41344408
          Length = 644

 Score =  470 bits (243), Expect = e-137
 Identities = 243/243 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgccttcatcttcctggtaaaaagatctgcaacatatcaccaagttgtggtctgaactat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tgccttcatcttcctggtaaaaagatctgcaacatatcaccaagttgtggtctgaactat 384

                                                                       
Query: 61  gatgctactagtctcagattctgagacttcacagaattcacagaattcgatttactacca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gatgctactagtctcagattctgagacttcacagaattcacagaattcgatttactacca 324

                                                                       
Query: 121 aaatgtaactcgaggtcttttttctttttgtttctcaacaaaacagacaactgccccctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aaatgtaactcgaggtcttttttctttttgtttctcaacaaaacagacaactgccccctc 264

                                                                       
Query: 181 aaaattcaatacccaactttaagtgagatagctataaaatcttccgtgccagtcagagac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aaaattcaatacccaactttaagtgagatagctataaaatcttccgtgccagtcagagac 204

              
Query: 241 ggg 243
           |||
Sbjct: 203 ggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)