BAC Information

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BAC

Clone NameMSMg01-391L07
Chromosome12 (Build37)
Map Location 111,281,524 - 111,281,764
singlet/doubletsinglet
Overlap geneLOC100040746
Upstream geneBM948371, LOC668194, Dlk1, Gtl2, Rtl1, 6430411K18Rik, B830012L14Rik, LOC100040715, LOC100040724, LOC675987, LOC100041509
Downstream gene3110009F21Rik, Dio3as, Dio3, EG629595, EG668245, LOC100040799, Ppp2r5c, 9430024F10Rik, Dync1h1, 1700001K19Rik, Hsp90aa1, Wdr20a, Rage, 2810455K09Rik, LOC100041649, 2810452K22Rik, 4930573I19Rik, Ankrd9, 6030440G07Rik, Rcor1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391L07.T7 (MSMg01no391_l07.b1)MSMg01-391L07.TJ (MSMg01no391_l07.g1)
ACCAG493415AG493416
length790770
length of high quality
(start - end)
242 (68 - 309)195 (119 - 313)
definitionCHROMAT_FILE: MSMg01no391_l07.b1 PHD_FILE: MSMg01no391_l07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:00 2005CHROMAT_FILE: MSMg01no391_l07.g1 PHD_FILE: MSMg01no391_l07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTTTCACAACACCGCGGAATTCCAGC
CCTTACCCCCTTTGCCGATGAACAGCAGTGTGGAACTGTAAGCTGAATAA
ACCCTTTCCTCCTCAACTTGCTTCTTGGTCATGATGTTTGTGCAGGAATA
GAAACCCTGACTAAGACAGTGACTAACGTAGGGATGTTGAACTTTTATCA
AGAAATGTATCCCCTTTGGAACCAAACCAAAGGGAGTTAGCCTTGAGCTC
AGGGCCAGTGGGAGAAGGTGACAGGTGTTCTGGGAGCTGGCTCCCTGGGG
CTCCTGAGTTCTTTTGTTTGAGCAGTGTGCAGGTTCTGCCATAGCCGTTC
CTTCCCAAATGCTGCTATCAGGTACCATGGTGAGGAGTGTTCAGGAAATC
AACACGCCCCCCCCCCACCCAGCTTGCACTCCAGGGAGGAGAATAACACA
GGTGACTTTATGAAACTGAGGCGGCCTTGAGGACTCGGCCTAGTTACTCA
TGCTTCTTGACCGCCTACCTGCCCCGTGAATGTTCCCCGTCTGTGAACTC
CAAGTGTACCCCTTCTGCCCCCCCCCCCTTTCCTCACTTCCCGGTCCTCT
CCCTCCTTCCCTCTTTTTAAAAAATCCCCTCCCCCCGTCACCCCCCCCCA
CCCCCTCCCCCTGTCTTTTTAACCCCCCTCCCCTTCCTTTTCTATCTCCA
CCCTTATTTTGTGTTTCTCTCCTTCCCACCCCTTCTTTCTTTCTTCTTCT
TCCCACCTCCCCCACCCCTCTCTTCCTTTTCTCCTCCTCT
TCCCAAGATGTGGTAGGCCGGCGGCGCCTGGTCCACACATCAGGTGAACT
ATAGATTTTCCGCGAAATTCCTGTCTCTTCCATTTGTAGCATACACACAC
ACACACACACACCCCACGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAG
AGAAAGAGAAAGAGAGACAGAAAGAGAGAGAAAGAGACAGAGAGAGACAG
AGAGACAGAGACAGAGAGACAGAGACAGAGAGAAAGAGAGAGAGACTGAG
ACAGAGACAGAGAGAGAGAGAGCTCTCTACATCAGCAGATAGACTCCGGT
TTCCAGGAGTTCATTTGTTTTACAGGCCTAAGTTTATGCATCCACTGGCG
AGATGCTACAGCCGCTTTCACCTGGCGATCATCTATATTGCTCCTGCTAA
GTTTCCATTCACACCCCCTTGCATTATTACCCCCCTTCAGTCCCCTCCGA
TAAACCTCTGGACGGTCTATCGCCGCGTCCGTCCCTGCCCATTTCCCCTT
CCGCCCTTTCCCCTCTCCTCTCCTTTTCCCATTTCTCCTCCTCCTCTGCC
TCCTCTGACTGCACTCCCCCCCCCTCCCCCATCTCCCCCCCCATTTTCCC
CACCCCCCTCTCGCTCCTTCGCCTTGTTTTCCTTCTTCCCCCCCCCCCCC
CTTCCTTTTTTTCCTTCTTCCCCCTTCCCCTTTTTTTTCCCTTTCTCTCT
TTCTTACCTCCCTACCCCTCCTTTTTCTCCTTTTCGCCTTCCCCCCGCTC
CCCCCCCTACTCTCTTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_l07.b1 MSMg01no391_l07.b1 CHROMAT_FILE:
MSMg01no391_l07.b1 PHD_FILE: MSMg01no391_l07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:00 2005
         (242 letters)



>mm_chr12_111281223_111281864
          Length = 642

 Score =  458 bits (237), Expect = e-133
 Identities = 240/241 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgaacagcagtgtggaactgtaagctgaataaaccctttcctcctcaacttgcttcttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 atgaacagcagtgtggaactgtaagctgaataaaccctttcctcctcaacttgcttcttg 483

                                                                       
Query: 61  gtcatgatgtttgtgcaggaatagaaaccctgactaagacagtgactaacgtagggatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 gtcatgatgtttgtgcaggaatagaaaccctgactaagacagtgactaacgtagggatgt 423

                                                                       
Query: 121 tgaacttttatcaagaaatgtatcccctttggaaccaaaccaaagggagttagccttgag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tgaacttttatcaagaaatgtatcccctttggaaccaaaccaaagggagttagccttgag 363

                                                                       
Query: 181 ctcagggccagtgggagaaggtgacaggtgttctgggagctggctccctggggctcctga 240
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 362 ctcagggccagtgggagaaggtgacaggtgttctgggagctggctccctgaggctcctga 303

            
Query: 241 g 241
           |
Sbjct: 302 g 302


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)