BAC Information

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BAC

Clone NameMSMg01-392B04
Chromosome12 (Build37)
Map Location 98,677,167 - 98,677,537
singlet/doubletsinglet
Overlap genenone
Upstream geneEG628277
Downstream geneLOC382626, LOC100039743, LOC667732, LOC628351, LOC100039770, LOC667746, Galc, Gpr65, Kcnk10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392B04.T7 (MSMg01no392_b04.b1)MSMg01-392B04.TJ (MSMg01no392_b04.g1)
ACCAG493695AG493696
length754782
length of high quality
(start - end)
510 (72 - 581)371 (75 - 445)
definitionCHROMAT_FILE: MSMg01no392_b04.b1 PHD_FILE: MSMg01no392_b04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:29 2005CHROMAT_FILE: MSMg01no392_b04.g1 PHD_FILE: MSMg01no392_b04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCACCACGACTACACAGCTAAGTAGGAGGGCTAGTCTAAACTC
AAAGTAATTTAATTCTATTAAAATTTTTATCAAGTAGGTCTTAAGGATTT
TTTTTTTTACTTTTTACTGGTTATTTTATTTATTTACATTTAAAATGTTA
TCACCTTCCAGGTTTCCCCTCCACAAACCCCCTATCCAACTCCTCTCTCC
CCTGCTTCTATGAGGGTGCTCCCCCACCCACCCACTCCTGCCTCACTAAC
CTAGCATTCCCCTATGCTGGGACATCAAACTTCCACAGGATCAAGGACCT
CCCCTCCCATTGATGACTAATAAGGTCATCCTCTGGAACATATGCAGCTG
GAGCCATGGGTCCCTCCATGTGTACTCCTTGGTTGGTAGTTTAGTCCCTG
GGAGCTCTGGGAACTCTGGCTGGTTGATATTGTTTTTCTTCCTATGGGGT
TGCAAACCCCTTCAACTCCTTTAGTCCTTCCCCTAGCCCCTCTATTGTTG
TACCCGTGCTCAGTCCAATGGTTGACTTCAAGTATCCATATCTGTATTGG
TAAGGATCTGGCAGAGCCTCTTAGGAGATCACTATATCAGGCTCCTGGTA
GCAAGCCCTTCCTTGCTTCAGCCATAGTAACTCCTTTGGCGGCTGCCTAA
AAGATGAATCCCTGGCGGCAGGGGGCAGTCTCTCGATGCCCTTTCCTCCG
TCCC
CACTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCCTCTCCAACTTTCTAGCTATATGA
TTTTGGCTGAGTCTCACGTTTTCCCATATACAAAATGGAATAAGTGCAAT
CAACTCATGAAGATTGTTGTGAGCTTTTACTGGTAGTATATATGGAGATT
ATTTATCACAGTGGCAGGCACACTATAAACACACATTGTTTATTGACATA
GTAATAAACTATTACTATAAAAATTACTATGTATACTCAGATTGTTAATA
ATATAGCTACAGGAAATAACCTTTGTTATATACCATAAAACTTGCTAAAC
ATTTTCATGCAGAGATTAATTAAATGTTTGTTGCATCTATCTATAATTCT
AAAATGTTTATGATTTACACCCATGAGAATTCACATATCTTTCATAATAT
GTGTCAAATGCAAAGTTTCATATGTATTGTATTCCAGATCCCTTATTCAC
AGGTAACATTTACCAAAGGCCTGAAACTTCTATTTTAATATTTCCTGACA
ACAGTATGAACCCCTTGAATGTATACATTACCCTCCACTTTTGAGCCCCT
TTTATTCCCAATACCCCGGTTGCTACAACCCTTTATACTCTTTAACTAAC
ATTCTCAGGCGGGCATTTCCCCTTTCTTCCTCCCAAAAATAGAACAAACC
ACCCCCGTTTTCTATTTTTCTATCCCCTATTTCTTTTTTCTCCACCTCTT
CCACCTCGTCTACCCTCTTTTTTTTCCCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_b04.g1 MSMg01no392_b04.g1 CHROMAT_FILE:
MSMg01no392_b04.g1 PHD_FILE: MSMg01no392_b04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:29 2005
         (371 letters)



>mm_chr12_98676967_98677737
          Length = 771

 Score =  671 bits (347), Expect = 0.0
 Identities = 365/371 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctctccaactttctagctatatgattttggctgagtctcacgttttcccatatacaaa 60
           ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 201 tcctctccaactttctagctatatgattttggctgaggctcacattttcccatatacaaa 260

                                                                       
Query: 61  atggaataagtgcaatcaactcatgaagattgttgtgagcttttactggtagtatatatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atggaataagtgcaatcaactcatgaagattgttgtgagcttttactggtagtatatatg 320

                                                                       
Query: 121 gagattatttatcacagtggcaggcacactataaacacacattgtttattgacatagtaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagattatttatcacagtggcaggcacactataaacacacattgtttattgacatagtaa 380

                                                                       
Query: 181 taaactattactataaaaattactatgtatactcagattgttaataatatagctacagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaactattactataaaaattactatgtatactcagattgttaataatatagctacagga 440

                                                                       
Query: 241 aataacctttgttatataccataaaacttgctaaacattttcatgcagagattaattaaa 300
           |||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 441 aataacctttgcaatataccataaaacttgctaaatattttcatgcagagattaattaaa 500

                                                                       
Query: 301 tgtttgttgcatctatctataattctaaaatgtttatgatttacacccatgagaattcac 360
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 501 tgtttgttgcatctatctataattctaaaatgtttatgatttagacccatgagaattcac 560

                      
Query: 361 atatctttcat 371
           |||||||||||
Sbjct: 561 atatctttcat 571


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 771
Length adjustment: 9
Effective length of query: 362
Effective length of database: 762
Effective search space:   275844
Effective search space used:   275844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)