Query= MSMg01no392_c03.b1 MSMg01no392_c03.b1 CHROMAT_FILE:
MSMg01no392_c03.b1 PHD_FILE: MSMg01no392_c03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:34 2005
(497 letters)
>mm_chr12_5036227_5037120
Length = 894
Score = 907 bits (469), Expect = 0.0
Identities = 486/493 (98%), Gaps = 3/493 (0%)
Strand = Plus / Minus
Query: 5 gaattctcactctacttgttaagtcgtggaatcccagagcaagaaaaacctgaactctac 64
||||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 694 gaattctcagtctacttgttaagtcatggaattccagagcaagaaaaacctgaactctac 635
Query: 65 ccaatctaggcctagttcaagtctttatatgtagcacactatacaaaggccagaagctca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 ccaatctaggcctagttcaagtctttatatgtagcacactatacaaaggccagaagctca 575
Query: 125 ctgaagcaagtatatttcttacttagtgttccatactagttaataagagagagtgggtag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 ctgaagcaagtatatttcttacttagtgttccatactagttaataagagagagtgggtag 515
Query: 185 gccccactccaaaacctagctgggcaacacacactagaatccatggtgaagagtgggtcg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gccccactccaaaacctagctgggcaacacacactagaatccatggtgaagagtgggtcg 455
Query: 245 ggggcttggactcacagttgagtagtcagggagggaaagacaaaggagttgggtgagagg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 ggggcttggactcacagttgagtagtcagggagggaaagacaaaggagttgggtgagagg 395
Query: 305 aggttaatatttccaaagtatgtatgaaattttcaagaaataaaaatatcattgagagaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 aggttaatatttccaaagtatgtatgaaattttcaagaaataaaaatatcattgagagaa 335
Query: 365 gagaacatattcttattctttgggaacaagaagatgttcttccttctatcacctctccta 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 gagaacatattcttattctttgggaacaagaagatgttcttccttctatcacctctccta 275
Query: 425 atagcagcattttagaaaagtaagagaaaccacataagcaccatgaacatagaactttta 484
|| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 274 at---agcattttagaaaagtaagagaaaccatataagcaccatgaacatagaactttta 218
Query: 485 gtttgggtggata 497
|||||||||||||
Sbjct: 217 gtttgggtggata 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 894
Length adjustment: 10
Effective length of query: 487
Effective length of database: 884
Effective search space: 430508
Effective search space used: 430508
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no392_c03.g1 MSMg01no392_c03.g1 CHROMAT_FILE:
MSMg01no392_c03.g1 PHD_FILE: MSMg01no392_c03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:34 2005
(412 letters)
>mm_chr12_4842220_4843031
Length = 812
Score = 723 bits (374), Expect = 0.0
Identities = 404/422 (95%), Gaps = 13/422 (3%)
Strand = Plus / Plus
Query: 1 ctacaacttcaatgtgtactaaggagtcttatttacctaccttctgggtagaatagattg 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctacaacttcaatgtgtactagggagtcttatttacctaccttctgggtagaatagattg 260
Query: 61 ggctcctgccctgagttctaaatgtggcaaaggaaaaatccttctggctacccagagata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggctcctgccctgagttctaaatgtggcaaaggaaaaatccttctggctacccagagata 320
Query: 121 cacacagatggatgctacagagatcaaacacaaactcatgcatatacacagttgctaaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacacagatggatgctacagagatcaaacacaaactcatgcatatacacagttgctaaga 380
Query: 181 tagtcacattcacagagatatttatgcatgctcacaagcatttacacacagacacaccgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 381 tagtcacattcacagagatatttatgcatgctcacaagcatttacacacagacacacagg 440
Query: 241 agagaattcctgatggtcaaacagatgcttagaaaatatttagatcgacagacctacata 300
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agagaagccctgatggtcaaacagatgcttagaaaatatttagatcgacagacctacata 500
Query: 301 tattcatacagataggcccttggacaaatgcatgcttgaatatgtgcacatgcaca---- 356
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 501 tattcatacagataggcccttggacaaatgtatgcttgaatatgtgcacatgcacagtcc 560
Query: 357 ---------ctgcctttcccatttccccaatgccttcagctttcataaagttggatctac 407
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atttatagactgcctttcccatttccccaatgccttcagctttcataaagttggatctac 620
Query: 408 tg 409
||
Sbjct: 621 tg 622
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 812
Length adjustment: 9
Effective length of query: 403
Effective length of database: 803
Effective search space: 323609
Effective search space used: 323609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
