BAC Information

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BAC

Clone NameMSMg01-392I03
Chromosome12 (Build37)
Map Location 105,715,425 - 105,715,925
singlet/doubletsinglet
Overlap genenone
Upstream gene8430415E04Rik, Serpina10, Serpina6, Gm46, Serpina1f, EG435316, Serpina1b, Serpina1d, LOC667951, LOC628801, Serpina1a, LOC667954, Serpina1c, Serpina1e, Serpina11, Serpina9, Serpina12, Serpina4-ps1, Serpina5, Serpina3a, Serpina3b, Serpina3c, LOC435318, LOC628883, Serpina3f, LOC667997, Serpina3g, Serpina3h, EG628900, EG238395, Serpina3k, EG628916, Serpina3m, Serpina3n, Gsc
Downstream geneDicer1, Clmn, 4831426I19Rik, Snhg10, Glrx5, LOC100040301, Tcl1b2, Tcl1b1, Tcl1b5, Tcl1b3, Tcl1b4, Tcl1, LOC100040310, 2810011L19Rik, LOC100040339, EG668081, D430019H16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392I03.T7 (MSMg01no392_i03.b1)MSMg01-392I03.TJ (MSMg01no392_i03.g1)
ACCAG494026AG494027
length762759
length of high quality
(start - end)
498 (51 - 548)81 (73 - 153)
definitionCHROMAT_FILE: MSMg01no392_i03.b1 PHD_FILE: MSMg01no392_i03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:03 2005CHROMAT_FILE: MSMg01no392_i03.g1 PHD_FILE: MSMg01no392_i03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAAAACTTATGCTCTTTTAGCAGTTTTTCACAAACGCATCTGACC
CATGACTTGGCTAGACATACAAGCTTCATAATTTACTCTAAATTTCAAAT
CCCCTTGACGTTTAAATAAAAGATCTTCATTAATGAGGTTTACATGAATG
AAAACGTTAGAAGCTGATATGGGTTAGCTAGGGGCTTCGGGAAGGTCTGT
GCTGGCCGCTTTTTTTTTTTTTCAAATGACTGACTTTGCTAATCATTTCA
AGAGAAAGTTCCTTTAAGAACAAATTATCCTCATTTGCATTCTGTGATTT
ACAAAAGCCTCGGTGCTGCGGAGTCACTTTGAAACGAGCTTTGGGTAAAT
AACTCAGCTGCTCTCTGCAAACCGGGAAGCCCAAGTTATTTTCTCTTCCC
GAGGCCCTGCGAAACGCGTCATTTAGGGGGACATCCTTTTCCCTCCCAGG
ATTCTGGGGCACTTTCCTAACACTTTGATTAGTGTTATTTTATTTCGAAC
TTGCAAAATTTCCAACAAAGAATCCCCTAGCTAATGTCCAAGGATCGGAA
GCCGCAGTCCCCACATTCCGCTGGCTGTGCCCCACTTTAAGGTGGCCCTG
AGCTCTCTGTTCAACGGCCCCACTCCCAACTCCCGCAAGAAGACCCTCTG
CACCCCCTGACATACCCTTTAGGACCCCCCAACCCCTGAAATCGCTTTCC
CACACCCGGCCA
CATGAAGTGGGAGGCCTGGNGGNCGCCCGGATGGGCATTTGAGGTGAACN
ATACAAGGTAACTACACCCCCCAGCCTTCCTTTTGCAGNAGTAGGAATGG
AGAATGGCGTAGATTCTTTGGAGAGGGTGATGCAGTAATCACGCTGTAGG
TAGGTACTCAGAGGAAGCGGGAGGCAAGGACATGGCAGGCACTGCAGCCA
GCGTCCACCATGTTTCTTCATAGAGGGCAAAGGGCTTGTGACTCAATTGA
TCCCCAACAGATTAATGGATGACCACAGTTTGCTCAGGCCACACACTATT
ACTGCATTAGACAATTTTTATTTTTGCCATTTCCTGCTGCCCCGTGCGTG
AGCCATTCTTTGCGCCCTAACCCAACGAAGGCAGACACAGCAGCCCTATG
TTATGCGACCTCCCCCGATGTGATAATCCCACCCCGCGCACTCGTGCCCC
CCTGCAGTGCTCCACCTGTCCGGCTTTCCCTTCCTCCGTGTCCCGCCCCC
CCTCTCCCTCCTCCTTTTTTCTTCCCTTTCCTCCTCCCCCTCCCCTCCCT
CCCTTTTCCCCCTCCCCCTCTACTTCCCTCCCCTCGCTTTCTTTTCCCTC
CTTCCTCCCTCTCTTCCCCCTTTTCCCTCCCACCCCCCCCCCCATCCCCT
CTTCTCCCTCGCTTCTTACCACCCCCCCCCCCCAACTCTACTTCCTCCCC
CCCCCCTTCACTTTCCCCCCCCCCTCCCCCCCCCTCCACTCCCTTCTTTT
TTCCCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_i03.b1 MSMg01no392_i03.b1 CHROMAT_FILE:
MSMg01no392_i03.b1 PHD_FILE: MSMg01no392_i03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:03 2005
         (498 letters)



>mm_chr12_105715225_105716125
          Length = 901

 Score =  934 bits (483), Expect = 0.0
 Identities = 496/501 (99%), Gaps = 3/501 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaattcaaaa-cttatgctcttttagcagtttttcacaaacgcatctgacccatgacttg 59
           |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 gaattcaaaaccatatgctcttttagcagtttttcacaaacgcatctgacccatgacttg 642

                                                                       
Query: 60  gctagacatacaagcttcataatttactctaaatttcaaatccccttgacgtttaaataa 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 gctagacatacaagcttcataatttactctaaatttcaaatccccttgacgtttaaataa 582

                                                                       
Query: 120 aagatcttcattaatgaggtttacatgaatgaaaacgttagaagctgatatgggttagct 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 aagatcttcattaatgaggtttacatgaatgaaaacgttagaagctgatatgggttagct 522

                                                                       
Query: 180 aggggcttcgggaaggtctgtgctggccgc--tttttttttttttcaaatgactgacttt 237
           ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||
Sbjct: 521 aggggcttcgggaaggtctgtgctggccgctttttttttttttttcaaatgactgacttt 462

                                                                       
Query: 238 gctaatcatttcaagagaaagttcctttaagaacaaattatcctcatttgcattctgtga 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 gctaatcatttcaagagaaagttcctttaagaacaaattatcctcatttgcattctgtga 402

                                                                       
Query: 298 tttacaaaagcctcggtgctgcggagtcactttgaaacgagctttgggtaaataactcag 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 tttacaaaagcctcggtgctgcggagtcactttgaaacgagctttgggtaaataactcag 342

                                                                       
Query: 358 ctgctctctgcaaaccgggaagcccaagttattttctcttcccgaggccctgcgaaacgc 417
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 341 ctgctctctgcaaaccgggaagcccaagttattttctcttcccgaggccctgggaaacgc 282

                                                                       
Query: 418 gtcatttagggggacatccttttccctcccaggattctggggcactttcctaacactttg 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 gtcatttagggggacatccttttccctcccaggattctggggcactttcctaacactttg 222

                                
Query: 478 attagtgttattttatttcga 498
           |||||||||||||||||||||
Sbjct: 221 attagtgttattttatttcga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 901
Length adjustment: 10
Effective length of query: 488
Effective length of database: 891
Effective search space:   434808
Effective search space used:   434808
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)