BAC Information

Click to search

BAC

Clone NameMSMg01-393K02
Chromosome12 (Build37)
Map Location 104,361,304 - 104,361,583
singlet/doubletsinglet
Overlap gene9030205A07Rik
Upstream geneSlc24a4, Rin3, Lgmn, Golga5, Chga, Itpk1, Moap1, D230037D09Rik, 5730410I19Rik, Btbd7, EG634678, Cox8c, LOC667269
Downstream genePrima1, EG544888, Asb2, Otub2, Ddx24, D12Ertd647e, Ifi27, 1810023F06Rik, 8430415E04Rik, Serpina10, Serpina6, Gm46, Serpina1f, EG435316, Serpina1b, Serpina1d, LOC667951, LOC628801, Serpina1a, LOC667954, Serpina1c, Serpina1e, Serpina11, Serpina9, Serpina12, Serpina4-ps1, Serpina5, Serpina3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-393K02.T7 (MSMg01no393_k02.b1)MSMg01-393K02.TJ (MSMg01no393_k02.g1)
ACCAG494880AG494881
length801797
length of high quality
(start - end)
125 (64 - 188)286 (63 - 348)
definitionCHROMAT_FILE: MSMg01no393_k02.b1 PHD_FILE: MSMg01no393_k02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:38:38 2005CHROMAT_FILE: MSMg01no393_k02.g1 PHD_FILE: MSMg01no393_k02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:38:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCGTTAATACGACTCACTATATTTCGACAATCCGCGGAATTCAGGNCTT
CCTGCCCGAAAGCAAGTAACCTGTTCTTAGATGGATCTCTGATGCTTTGA
TAAACACCATGACCAAAGGAACGTGGTGAGGAAATGGTTTTTTTGGGTTA
CTCTTCGATGTCACAGTCCACCGCTGAGGGAAGGGGGCGGGGGACGAGGA
ACGTGAAGCCGAGACTAGCAGAGGACCGCTCCTCGTCGGTTTCCTCCCAG
GCTCAAATTTGGCTTCTTTTCTTACAGAGCCTTTATTCTCCTGCATCAGG
ATCAAGGGGATGCTGTGTGTTTGTCTCACATGTGTGAGGGGGTGTGCATC
CAGCAAGGTAAATGAGGCGTGGGACGTGTGGCCTTGTTCTATATGGTCTC
CATATTTTCCCCATCTAATGCATATCTATTTCTGTGCACCCCCCTCCCAA
TCCCCTTCACTTACGTGGTGCTTGGTTTCGCTTGACTCCTTAACGATATT
TGTCCTGTTTTGGCTTTTTATCTGTTCTGATAAATTTCTCTGGCCTCAAT
ACATTTTCTCTTTTTGGTAGCACTTTTCTCTTTACCCCTCTTCTTTTGAT
TTTTTCTCGTTTTATTTTTTCTCTGTTTTTTCTTCTCCCTTTATCCTTAT
CTTCTCCTATTACTCTTTCTCATCTACTTTCTTGCTTTTATTATTTTTTC
CATTTTTTTTTTTTTTCTCCTACATTATATCTTTTTACTTCTTTTCCTCA
CTTCTTTTCCCATCTAACCTCTCATTCTCCATTCCTCTCCTTTTCTCTCC
N
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTCAGAAGGAATCAGTGATACAGACAAAAGTGTATGTTT
CTGGAAGCCTTTGTCTCATGTCCTGGGAAATGTGTGTTTCCTATGGATGC
TGCCTGAAGGGTTAGTGAGTTTTCATTTGACCATTTTCTAAAAGGATAGT
TCAAGAAGACAGATACGGAGTGTATTGCAAATGCTGGACTGGCTGTATGG
AGAGGAACCGTTGTCAACATTTATCCATTTGTGCATTCATTTATTCATTC
ATTCATCATGCCATGTGTATCTGGTGGGGGCCAGGCATCATGCTCGCCAC
TGGGGATCAAGGAGGGTAAAGTGATCATAGATGGCCATTGACGTGGCTCT
CCTACTGCACGCGACATCATGACGGATGGTTCATACACCGCATGGTGTAC
ATCCAATCCTTACGTGAGTGTTACATGGTAGATGGAGGAAAAAGGCTGAA
TGCTTGCCTAATGCTACTGAGAGAGAGAGAATGAGATAGAGAGATAGAGA
TCGAGAGAGATAGATACACATTTACATTTCTTTTCTTTTTTCTTTTTTAC
TTTTTCTTTCTTATTCTTTTTTCTATATTCCCCTTTCTCCTCTTCCCATC
TTCATTTCTTGTTCTTCCTCTATTTTTTTTTCTATTCTCCTTTTTTCTTT
TTCCACTTTGCTTTCTCCTTATTCGCTCCTCTTACCTTTTTTTCTCCTTT
TACCCCCTTTTTATTCTACCTCTTCTCCTATTTCTCTTTTATTGCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no393_k02.g1 MSMg01no393_k02.g1 CHROMAT_FILE:
MSMg01no393_k02.g1 PHD_FILE: MSMg01no393_k02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:38 2005
         (286 letters)



>mm_chr12_104361101_104361786
          Length = 686

 Score =  526 bits (272), Expect = e-154
 Identities = 278/280 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaaggaatcagtgatacagacaaaagtgtatgtttctggaagcctttgtctcatgtcctg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaaggaatcagtgatacagacaaaagtgtatgtttctggaagcctttgtctcatgtcctg 263

                                                                       
Query: 64  ggaaatgtgtgtttcctatggatgctgcctgaagggttagtgagttttcatttgaccatt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggaaatgtgtgtttcctatggatgctgcctgaagggttagtgagttttcatttgaccatt 323

                                                                       
Query: 124 ttctaaaaggatagttcaagaagacagatacggagtgtattgcaaatgctggactggctg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttctaaaaggatagttcaagaagacagatacggagtgtattgcaaatgctggactggctg 383

                                                                       
Query: 184 tatggagaggaaccgttgtcaacatttatccatttgtgcattcatttattcattcattca 243
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tatagagaggaaccgttgtcaacatttatccatttgtgcattcatttattcattcattca 443

                                                   
Query: 244 tcatgccatgtgtatctggtgggggccaggcatcatgctc 283
           |||||||||||| |||||||||||||||||||||||||||
Sbjct: 444 tcatgccatgtgcatctggtgggggccaggcatcatgctc 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)