Query= MSMg01no393_n10.b1 MSMg01no393_n10.b1 CHROMAT_FILE:
MSMg01no393_n10.b1 PHD_FILE: MSMg01no393_n10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:58 2005
(496 letters)
>mm_chr12_118346754_118347652
Length = 899
Score = 849 bits (439), Expect = 0.0
Identities = 482/501 (96%), Gaps = 13/501 (2%)
Strand = Plus / Plus
Query: 7 ggaattcactactcatgccagaaactactgtattctttccctgaactagtctgtggggcc 66
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggaattcactactcaagccagaaactactgtattctttccctgaactagtctgtggggcc 260
Query: 67 acttgtcacagccactactggtgaacacacacacacacacacacaca-------a-acac 118
||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 261 acttgtcacagccactactggtgaacacacacacacacacacacacacacacacacacac 320
Query: 119 acggatggaaagataatgcaataaccatgaaccacaacaccctgtctactcaccttagaa 178
|| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ac--acggaaagataatgcaataaccatgaaccacaacaccctgtctactcaccttagaa 378
Query: 179 caccatgactgaaggaa-gc-cccca-ccccactcttctgctgacctccatccaatttac 235
||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||
Sbjct: 379 caccatgactgaaggaaggctccccacccccactcttctgctgacctccatccaatttac 438
Query: 236 ctcatggagacacagtttccttctaagcaaatagatacattcatacacctatcatgtcag 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ctcatggagacacagtttccttctaagcaaatagatacattcatacacctatcatgtcag 498
Query: 296 aggttgctgtggggatctttccacccacgtgtatctgtaaacatcctggagctacataag 355
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 aggttactgtggggatctttccacccacgtgtatctgtaaacatcctggagctacataag 558
Query: 356 gtacacaggccatatgtgaggtggaggcagagaggtattgttagagacactaggctccct 415
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 559 gtacacaggccatatgtgaggtggaggcagagaggtattgtcagagacactaggatccct 618
Query: 416 gccccatagtgataggaaagcacagaaaatcacacagaatgccctgtctacacagagctg 475
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 619 gccccatagtgataggaaagcacagaaaatcacactgaatgccctgtctacacagagctg 678
Query: 476 ccaggatttgaatcccaaggg 496
|||||||||||||||||||||
Sbjct: 679 ccaggatttgaatcccaaggg 699
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 899
Length adjustment: 10
Effective length of query: 486
Effective length of database: 889
Effective search space: 432054
Effective search space used: 432054
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no393_n10.g1 MSMg01no393_n10.g1 CHROMAT_FILE:
MSMg01no393_n10.g1 PHD_FILE: MSMg01no393_n10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:58 2005
(471 letters)
>mm_chr12_118550791_118551661
Length = 871
Score = 862 bits (446), Expect = 0.0
Identities = 461/466 (98%)
Strand = Plus / Minus
Query: 3 cctgttttctttaagacagtgtctctcattggcctggagctcaccagttaggctaggctg 62
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 871 cctgttttctttaagacagtgtctctcattggcctggagcttaccagttaggctaggctg 812
Query: 63 ctgctcagggagttctaggaatcctcctgcctctgtcttcccagtactgagattacaaat 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 ctgctcagggagttctaggaatcctcctgcctctgtcttcccagtactgagattacaaat 752
Query: 123 gtgcaatcatgcctggcatgggttctaagtcaaactcaggtccttgcagtttcaagacaa 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 gtgcaatcatgcctggcatgggttctaagtcaaactcaggtccttgcagtttcaagacaa 692
Query: 183 gagtgtgctggctgagtcatctctttctagactttctccccatcgccattttatggcaga 242
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 691 gagtgtgctggctgagtcatctctttctagactttctccccattgccattttatggcaga 632
Query: 243 atagttgtaggaagggcaggatagcaatgtctgttcctcatagctgtgtaccagcaaaac 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 atagttgtaggaagggcaggatagcaatgtctgttcctcatagctgtgtaccagcaaaac 572
Query: 303 atgttgagcagccattgggacttgatctgaccatcacagtttctctataaccctgtttcc 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 atgttgagcagccattgggacttgatctgaccatcacagtttctctataaccctgtttcc 512
Query: 363 catccttctttaacccctagactgttggcagggcagggtctcagcctcaaccctgaactg 422
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 511 catccttctttaccccctagactgttggcagggcagggtctcagccttaaccctgaactg 452
Query: 423 atgttccctgggtaaggaaagggcaacagaggatgtgaatgctttt 468
|||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 451 atgttccctgggcaaggaaagggcaacagaggatgtgaatgctttt 406
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space: 396921
Effective search space used: 396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
