BAC Information

Click to search

BAC

Clone NameMSMg01-393O17
Chromosome12 (Build37)
Map Location 28,668,185 - 28,774,950
singlet/doubletdoublet
Overlap genenone
Upstream geneSox11, LOC100043009, LOC669327
Downstream gene1110015M06Rik, Allc, Colec11, Rps7, Rnaseh1, Adi1, Ttc15, Tssc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-393O17.T7 (MSMg01no393_o17.b1)MSMg01-393O17.TJ (MSMg01no393_o17.g1)
ACCAG495099AG495100
length746762
length of high quality
(start - end)		526 (39 - 564)502 (67 - 568)
definitionCHROMAT_FILE: MSMg01no393_o17.b1 PHD_FILE: MSMg01no393_o17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:05 2005CHROMAT_FILE: MSMg01no393_o17.g1 PHD_FILE: MSMg01no393_o17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,668,185 - 28,668,706)(28,774,452 - 28,774,950)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTA
AACTCTAAGTTTTGAGGATGTTAAAACATTTTTTCTAAATGGCACAAGTG
CAGGATTTGAATCTCCTGGAAAAGGGCCAGGAGAGAAAGACAAATATCAC
ATTATTTCATAGTTTATTGTTTATACTATGGAAGCATTGGTGTCTTAAAA
CTTCAGCGGGCACTAGTGCTTAAAGGTCATTTACACATATGTTTAAACAG
CATTAAGAAGCATATCTAATGATGACAAGGACAGTCTTAACTCCACTGAC
ACAGATCATCCATTACATAGGACTGCTGTCTCCCTGTTTAAAGGGAGAGG
GCTGTGGAGTTGGCTTAGCTGGTAAAGTGTTTGTCACTCAAGTATGAGGG
CCTGGGTTAGATGGCCAGAACCCGCACACAGAAAAAGTCAGGAGTAGTTA
TATCTGCTTGTAATCTAACTGTTGGGGACAGGGAGACAGGAGGATCTTGG
GGCACCCTGGCCAGTCAGCCTGACCTAATTGCAGAGCCCCAGATTCTACT
GAGAGGTCCAGTCTCACAGAAGATGGATAGCTCCAGAACAAATCAACCTG
AGGCTCGTTAGCATTTGCTTTTAGAAGTAAGTGCACATATACATGCACTT
CTTGTGCATGGGTGTGCCCATACATAATACATGTGAAATCCAGAGCATGA
CAGCTCCATCCACGGGATCTGAAATGAAGCCCTTTTGTAGGTTTTN

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXATTGAAAGACTGCAGGGTGCATGAAGGAATCAGA
AATAAAGTGCTATAAAAATAATATGCTATTATGTTAAGATCTCAGTTAAG
TTTTCAGATGAGATTAGAAAATAGATTCTCTTAATTTTATGGAAGTCATT
TAATTATGTTGCTCTCCAAATGCCTTTATAAGAGCAAAGACTTTGTGAAT
TAGATTGCTTTATTATAAAATTCAAAAGGTAGTGTATCTGTTCCTTCCTT
CTTTCCTGTAGTCAGACGTAGAGGAAGCCCAGGAAGCTAGACTGGACAGG
TTCTGCCTGACCTGAACTTTGCATTAAATAAAATGATCTACATCTAAGTT
CTGTTCTTTAGGCAGGGTAACAGGATATATTTGCTAGATGGAACTTAAAA
AACATGTAGGATTTACTGTTGTGAAAACTTTAATCTAAAGCAGAACACAC
AAGATTTCTGGGCTGCTTTCAAAATAGTTTTTTTCTTTCATTGTTACACA
AAATTGGATTTACTANGACAACACACATCATCATGTTCATCCTTTACAAG
CTAAGCTGTCTATCACTTCTAGTTTAGATTTCCTCTTCCCCTTTTAAGGT
ACTTTCCTGGGAGTTCAGATGTTTCTACTTTCCCTTACGCGTGCGCGCCC
CCGCCCTAATCGTGTCCGTCAATCCTGTCCCTCCGTCAACCTGTCTATCG
CTGTTCACTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no393_o17.b1 MSMg01no393_o17.b1 CHROMAT_FILE:
MSMg01no393_o17.b1 PHD_FILE: MSMg01no393_o17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:05 2005
         (526 letters)



>mm_chr12_28667981_28668906
          Length = 926

 Score = 1009 bits (522), Expect = 0.0
 Identities = 522/522 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctaaactctaagttttgaggatgttaaaacattttttctaaatggcacaagtgca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctaaactctaagttttgaggatgttaaaacattttttctaaatggcacaagtgca 264

                                                                       
Query: 65  ggatttgaatctcctggaaaagggccaggagagaaagacaaatatcacattatttcatag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggatttgaatctcctggaaaagggccaggagagaaagacaaatatcacattatttcatag 324

                                                                       
Query: 125 tttattgtttatactatggaagcattggtgtcttaaaacttcagcgggcactagtgctta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttattgtttatactatggaagcattggtgtcttaaaacttcagcgggcactagtgctta 384

                                                                       
Query: 185 aaggtcatttacacatatgtttaaacagcattaagaagcatatctaatgatgacaaggac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaggtcatttacacatatgtttaaacagcattaagaagcatatctaatgatgacaaggac 444

                                                                       
Query: 245 agtcttaactccactgacacagatcatccattacataggactgctgtctccctgtttaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agtcttaactccactgacacagatcatccattacataggactgctgtctccctgtttaaa 504

                                                                       
Query: 305 gggagagggctgtggagttggcttagctggtaaagtgtttgtcactcaagtatgagggcc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gggagagggctgtggagttggcttagctggtaaagtgtttgtcactcaagtatgagggcc 564

                                                                       
Query: 365 tgggttagatggccagaacccgcacacagaaaaagtcaggagtagttatatctgcttgta 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgggttagatggccagaacccgcacacagaaaaagtcaggagtagttatatctgcttgta 624

                                                                       
Query: 425 atctaactgttggggacagggagacaggaggatcttggggcaccctggccagtcagcctg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atctaactgttggggacagggagacaggaggatcttggggcaccctggccagtcagcctg 684

                                                     
Query: 485 acctaattgcagagccccagattctactgagaggtccagtct 526
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 acctaattgcagagccccagattctactgagaggtccagtct 726


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 926
Length adjustment: 10
Effective length of query: 516
Effective length of database: 916
Effective search space:   472656
Effective search space used:   472656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no393_o17.g1 MSMg01no393_o17.g1 CHROMAT_FILE:
MSMg01no393_o17.g1 PHD_FILE: MSMg01no393_o17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:06 2005
         (502 letters)



>mm_chr12_28774252_28775153
          Length = 902

 Score =  965 bits (499), Expect = 0.0
 Identities = 499/499 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   attgaaagactgcagggtgcatgaaggaatcagaaataaagtgctataaaaataatatgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 attgaaagactgcagggtgcatgaaggaatcagaaataaagtgctataaaaataatatgc 640

                                                                       
Query: 61  tattatgttaagatctcagttaagttttcagatgagattagaaaatagattctcttaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 tattatgttaagatctcagttaagttttcagatgagattagaaaatagattctcttaatt 580

                                                                       
Query: 121 ttatggaagtcatttaattatgttgctctccaaatgcctttataagagcaaagactttgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 ttatggaagtcatttaattatgttgctctccaaatgcctttataagagcaaagactttgt 520

                                                                       
Query: 181 gaattagattgctttattataaaattcaaaaggtagtgtatctgttccttccttctttcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gaattagattgctttattataaaattcaaaaggtagtgtatctgttccttccttctttcc 460

                                                                       
Query: 241 tgtagtcagacgtagaggaagcccaggaagctagactggacaggttctgcctgacctgaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 tgtagtcagacgtagaggaagcccaggaagctagactggacaggttctgcctgacctgaa 400

                                                                       
Query: 301 ctttgcattaaataaaatgatctacatctaagttctgttctttaggcagggtaacaggat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 ctttgcattaaataaaatgatctacatctaagttctgttctttaggcagggtaacaggat 340

                                                                       
Query: 361 atatttgctagatggaacttaaaaaacatgtaggatttactgttgtgaaaactttaatct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 atatttgctagatggaacttaaaaaacatgtaggatttactgttgtgaaaactttaatct 280

                                                                       
Query: 421 aaagcagaacacacaagatttctgggctgctttcaaaatagtttttttctttcattgtta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 aaagcagaacacacaagatttctgggctgctttcaaaatagtttttttctttcattgtta 220

                              
Query: 481 cacaaaattggatttacta 499
           |||||||||||||||||||
Sbjct: 219 cacaaaattggatttacta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space:   438864
Effective search space used:   438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |