BAC Information

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BAC

Clone NameMSMg01-393P06
Chromosome12 (Build37)
Map Location 44,701,831 - 44,863,544
singlet/doubletdoublet
Overlap geneLOC100039059
Upstream genenone
Downstream geneENSMUSG00000066507, LOC100039081, LOC664854, Dnajb9, LOC100039062, Pnpla8, Nrcam, EG620025
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-393P06.T7 (MSMg01no393_p06.b1)MSMg01-393P06.TJ (MSMg01no393_p06.g1)
ACCAG495125AG495126
length772780
length of high quality
(start - end)		480 (33 - 512)527 (63 - 589)
definitionCHROMAT_FILE: MSMg01no393_p06.b1 PHD_FILE: MSMg01no393_p06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:08 2005CHROMAT_FILE: MSMg01no393_p06.g1 PHD_FILE: MSMg01no393_p06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,863,069 - 44,863,544)(44,701,831 - 44,702,357)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTAGTTCCT
TCCCTATTCCAATAAAGGGATAAAACAGAAGGCAGGCAGTTAGACAACAT
TTAATTTGCCCCTAATTCAGAACTGATCTAGAGAGTTGGGGACACCATAA
CTTTCAGCTCAGTATAGGATTTCCTGAGAAGACCAGGTTCATGGCCTACT
TACAAGGTTTAACCCCCAACCATCTGTCACTGGAAAGCCTAGCATTTGAC
TTGGTGCCATTCCCAATGTCCTGCCAGAGAAGCAGAGAACCTTTAGCAGC
AAGAGATAGAGAGATAGAAACACACCATCTGTGGGAGATATCTATGTTCC
TTATATTCCACATGTAGAATACAGGAGTGGGGACAACTACCAGGGAGTGG
GGAGGGAGGTCTGTGAATGTCTGTAGGCAGAGAGCTGTTAGTGTCAGAGC
CCAGGACACAGACTTCTTGGCTATACAAAAGTGGGGATTGGTGACGGAAC
GGTGTAAGCTGTGGGATGCCTTCTTCCTTGAGTAGTACCTGGTTCAGTTT
ATGAACTTACCCTGTAAATACGGGGCAATAGAACAAACAGCACGGGTTGT
ATTAAGATTCTTGAAATGCCTTCATTCAAAGATGAGAGCTCTGAAAATAA
CTTGCTTGGAGACCCGGCAAATTGTGGTGGAGGCCCCCCTCTGGGCTGAA
TAAGTTGGATGACAATAAATGGCAAAGGGGGGGGGGGAAATATAACACTT
TTTTTGGTAATATTAAAGCCTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTCAGTAAAGATAGAATGACAGCCCTCTGGCTCTGGCTC
CTGTAGAAAGATACATTTGGTGACAATGATGAATAGCTCCACAGTCTGGC
AAAGTCAGGCTGGGGACTATGTGAAGTACAACTGGTCTGAATGACAGAGA
GAAAGCAGACAGGAGCATTTCCTGATGCAGACTGACAGGAGCTTGGAGTG
AGGGTATATTTGGAAAATTGTAGGATATTATACCTTTTGGGGAACTGCCC
AGATCAAAGACATTAAAGTTTCACTCAAAACTTGACACATTACCATACAA
CAGTATAATATTCGTAGAGATGCTGGGTTTTAATCTTAGATCATTCAAAT
TATATAATAAAGACATTAAAATTATGATTTTTATTGAACTTCATATACTT
TAAATAGAAATCCTTAACCTAGATGTAATAGTTCAAAAATAAAAGTAAAA
TGCTCATATATCTAGCACCCAGATCCCAAGGTACAGATTTATATCAAGTT
TTAAAAACTGACTGCTAATATAGGAGCTGCATTTCCTAATAAGACATAAT
TGTCTAATAATATTTCTAACCCTTTCTTCCAATTGTGTTTATTCTAATAA
AAGGGTCTTGCTTTCTATTACATACTATCCATTTCCCATGTTATGGAAAA
CCGGGTATTAAATATTATCCAAAACTTTTGGCCGGAAATATAATAGAAGG
AGGTTTTTTTTCCTCCTTTATTCAATCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no393_p06.b1 MSMg01no393_p06.b1 CHROMAT_FILE:
MSMg01no393_p06.b1 PHD_FILE: MSMg01no393_p06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:08 2005
         (480 letters)



>mm_chr12_44862865_44863744
          Length = 880

 Score =  890 bits (460), Expect = 0.0
 Identities = 472/476 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctagttccttccctattccaataaagggataaaacagaaggcaggcagttagaca 64
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gaattctagttccttccctatcccaataaagggataaaacagaaggcaggcagttagaca 621

                                                                       
Query: 65  acatttaatttgcccctaattcagaactgatctagagagttggggacaccataactttca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 acatttaatttgcccctaattcagaactgatctagagagttggggacaccataactttca 561

                                                                       
Query: 125 gctcagtataggatttcctgagaagaccaggttcatggcctacttacaaggtttaacccc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gctcagtataggatttcctgagaagaccaggttcatggcctacttacaaggtttaacccc 501

                                                                       
Query: 185 caaccatctgtcactggaaagcctagcatttgacttggtgccattcccaatgtcctgcca 244
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 500 caaccatctgtcactggaaagcctagcatttgacttggtgccattcccaacgtcctgcca 441

                                                                       
Query: 245 gagaagcagagaacctttagcagcaagagatagagagatagaaacacaccatctgtggga 304
           ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 440 gagaaacagagaacctttagcagcaagagacagagagatagaaacacaccatctgtggga 381

                                                                       
Query: 305 gatatctatgttccttatattccacatgtagaatacaggagtggggacaactaccaggga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gatatctatgttccttatattccacatgtagaatacaggagtggggacaactaccaggga 321

                                                                       
Query: 365 gtggggagggaggtctgtgaatgtctgtaggcagagagctgttagtgtcagagcccagga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gtggggagggaggtctgtgaatgtctgtaggcagagagctgttagtgtcagagcccagga 261

                                                                   
Query: 425 cacagacttcttggctatacaaaagtggggattggtgacggaacggtgtaagctgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 cacagacttcttggctatacaaaagtggggattggtgacggaacggtgtaagctgt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space:   408900
Effective search space used:   408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no393_p06.g1 MSMg01no393_p06.g1 CHROMAT_FILE:
MSMg01no393_p06.g1 PHD_FILE: MSMg01no393_p06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:08 2005
         (527 letters)



>mm_chr12_44701631_44702557
          Length = 927

 Score =  980 bits (507), Expect = 0.0
 Identities = 522/527 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagtaaagatagaatgacagccctctggctctggctcctgtagaaagatacatttggtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagtaaagatagaatgacagccctctggctctggctcctgtagaaagatacatttggtg 260

                                                                       
Query: 61  acaatgatgaatagctccacagtctggcaaagtcaggctggggactatgtgaagtacaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaatgatgaatagctccacagtctggcaaagtcaggctggggactatgtgaagtacaac 320

                                                                       
Query: 121 tggtctgaatgacagagagaaagcagacaggagcatttcctgatgcagactgacaggagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggtctgaatgacagagagaaagcagacaggagcatttcctgatgcagactgacaggagc 380

                                                                       
Query: 181 ttggagtgagggtatatttggaaaattgtaggatattataccttttggggaactgcccag 240
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 ttggagtgagggtatatttggaaaattgtaggatatcataccttttggggaactgcccag 440

                                                                       
Query: 241 atcaaagacattaaagtttcactcaaaacttgacacattaccatacaacagtataatatt 300
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcaaagacattaaagtttcactcaaaacttgacacattaccatacaacagtataatatt 500

                                                                       
Query: 301 cgtagagatgctgggttttaatcttagatcattcaaattatataataaagacattaaaat 360
           ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||
Sbjct: 501 cgtagagatgctgggttttaatcttagatcattcaaactatataataaagagattgaaat 560

                                                                       
Query: 361 tatgatttttattgaacttcatatactttaaatagaaatccttaacctagatgtaatagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatgatttttattgaacttcatatactttaaatagaaatccttaacctagatgtaatagt 620

                                                                       
Query: 421 tcaaaaataaaagtaaaatgctcatatatctagcacccagatcccaaggtacagatttat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcaaaaataaaagtaaaatgctcatatatctagcacccagatcccaaggtacagatttat 680

                                                          
Query: 481 atcaagttttaaaaactgactgctaatataggagctgcatttcctaa 527
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atcaagttttaaaaactgactgctaatataggagctgcatttcctaa 727


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space:   474089
Effective search space used:   474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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