Query= MSMg01no394_j11.b1 MSMg01no394_j11.b1 CHROMAT_FILE:
MSMg01no394_j11.b1 PHD_FILE: MSMg01no394_j11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:40:01 2005
(249 letters)
>mm_chr12_41377992_41378643
Length = 652
Score = 418 bits (216), Expect = e-121
Identities = 242/253 (95%), Gaps = 5/253 (1%)
Strand = Plus / Plus
Query: 1 cctgattgggctgcatgggtcccatctctcanactcaaatactctgtctttgaacagtgt 60
||||| ||||||||| | ||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 cctgactgggctgcacgtgtcccatctctcaaactcaaatactctgtctttgaacagtgt 260
Query: 61 tgggtttcattgtttactttcctgaggctgacacagaccacatagtgaccaaactgccag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgggtttcattgtttactttcctgaggctgacacagaccacatagtgaccaaactgccag 320
Query: 121 tgatgcagagccatatgtccactcctgaagaggcacaagatacagacatcttaatactgg 180
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct: 321 tgatgcagagccatatgtccgctcctgaagaggcacaagatacaggcatcttaatactgg 380
Query: 181 ccttcatggtgacacagcaactgtgacctcttgccttgtctccccccccccc----ccgc 236
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 ccttcatggtgacacagcaactgtgacctcttgccttgtctcccccccccccacccccgc 440
Query: 237 cccccttgggtct 249
|||| ||||||||
Sbjct: 441 cccc-ttgggtct 452
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 652
Length adjustment: 9
Effective length of query: 240
Effective length of database: 643
Effective search space: 154320
Effective search space used: 154320
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no394_j11.g1 MSMg01no394_j11.g1 CHROMAT_FILE:
MSMg01no394_j11.g1 PHD_FILE: MSMg01no394_j11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:40:01 2005
(516 letters)
>mm_chr12_41538150_41539060
Length = 911
Score = 924 bits (478), Expect = 0.0
Identities = 505/516 (97%), Gaps = 5/516 (0%)
Strand = Plus / Minus
Query: 1 aggttccagacgctgctggtccatgattttgtcatacaaggaggcttccatcatctggga 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 aggttccaggcgctgctggtccatgattttgtcatacaaggaggcttccatcatctggga 652
Query: 61 aagtataggggaaggtctgtgaattccatcccacatgtcagccacaccagtacaagaatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 aagtataggggaaggtctgtgaattccatcccacatgtcagccacaccagtacaagaatg 592
Query: 121 tgcttctgtacacagatgaaatattttagttcattcagaacaggatttgattccttttta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 tgcttctgtacacagatgaaatattttagttcattcagaacaggatttgattccttttta 532
Query: 181 atgctttcaggagagggtcagcaagccaatgttgtaaatacatactgaacacttcagcct 240
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 atgctttcaggagagggccagcaagccaatgttgtaaatacatactgaacacttcagcct 472
Query: 241 ttgtattttctgttacgtctcaatgtgccagagcacaggctacagcttactgatccctga 300
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 ttgtatttcctggtacgtctcaatgtgccagagcacaggctacagcttactgatccctga 412
Query: 301 aaggatcaagggttttactgtgtgcttctaccagaggagacaatgtctacaagtctatta 360
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 aagaatcaagggttttactgtgtgcttctaccagaggagacaatgtctacaagtctatta 352
Query: 361 tggaaatgtttacttcatcatagacatagacaagtcccaattaccgcaaatagttagaag 420
||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||
Sbjct: 351 tggaaatgtttacttcatcatagacatagacaagtcccagttacc-ca----gttagaag 297
Query: 421 ccaagcctttctggagaactcttgtgctaggtgtacctgctttccccttgcacacagtaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 ccaagcctttctggagaactcttgtgctaggtgtacctgctttccccttgcacacagtaa 237
Query: 481 ttcaggacatggagaacgtacacctttgtataagtg 516
||||||||||||||||||||||||||||||||||||
Sbjct: 236 ttcaggacatggagaacgtacacctttgtataagtg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 911
Length adjustment: 10
Effective length of query: 506
Effective length of database: 901
Effective search space: 455906
Effective search space used: 455906
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
