BAC Information

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BAC

Clone NameMSMg01-394K15
Chromosome12 (Build37)
Map Location 85,760,892 - 85,761,290
singlet/doubletsinglet
Overlap gene2900006K08Rik
Upstream geneDpf3, Wdr21, Zfyve1, LOC626950, Rbm25, Psen1, Papln, Numb, LOC100042325, 2410016O06Rik, Acot2, Acot1, Acot4, Acot3, Acot5, LOC666963, Acot6, Dnalc1, Pnma1, C130039O16Rik, EG432676, Zadh1, Zfp410, 9830169C18Rik, Coq6, Entpd5, Rnf113a2
Downstream geneAldh6a1, Lin52, Chx10, Abcd4, 7420416P09Rik, Tmem90a, Npc2, Isca2, Ltbp2, 1110018G07Rik, Fcf1, Ylpm1, Prox2, Dlst, Rps6kl1, LOC100042021, Pgf, Eif2b2, Mlh3, Acyp1, 2810002I04Rik, Nek9, Tmed10, LOC100042549
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-394K15.T7 (MSMg01no394_k15.b1)MSMg01-394K15.TJ (MSMg01no394_k15.g1)
ACCAG495667AG495668
length793907
length of high quality
(start - end)
399 (76 - 474)---
definitionCHROMAT_FILE: MSMg01no394_k15.b1 PHD_FILE: MSMg01no394_k15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:40:07 2005CHROMAT_FILE: MSMg01no394_k15.g1 PHD_FILE: MSMg01no394_k15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:40:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCG
CGGAATTCTCTATGATCCGTCCCACTCAATCTTTCCTTTAAACTTTTTTT
TTTTTAGCTGAAAGAAAATTTAAGGAACTCAGAGAAGAACTATCAGGAGA
CTCTTAGAAGACTAGAAAGCAGATTTTTTGAAGAAAAGGTATTAGTATTA
AGACATGCTTTGTGGGTTGGACCTAGCCCTCCTGCACATATGTTACAGAT
GTGCAGTTTGGTCTTCATGTGGATCTCGAACAATAGCAATTCCACAGACT
ATTCCAAACGCTGTTGTCAGTCTGTTTTATTTGTTCTAGCTGGGCTGCCT
TGTCTGACCTCAGTGGGAGAGAATGAACCTAGCCCCACAGACACTTGGTG
TGCCATGGTGGGGGGATAGCCAGAGGGAGCCTCCATCTTCTCAGAGGGCA
AAGGGAGTGGGGAGGAAGGATTGTGGTAAGGTTTCCCTTTTTCCCTCTCT
CCTCCTCCTTTCTCTTCCCTCCCTCTCTTCCTCTTCCTTTTTCCTTCTTT
CTTCCCCCTTCTCCCTCCTTCCTCCTACCTCCCCCCTCCTTCTTTCCTTC
CCTTCTTCCCTTTTTCCTTCCTCTTCTCTTTTTCCCCCTTCCCCTTTTTC
CGTTCCCCTTCTCGCTCTTTCTTTTTTCCCCCCTTCCTTCCTTTACCTCG
CCTCTCTTTCCTCTCCTTTTCTCTCTCCCTGTTCTCCCTTGTCCTTCTTT
TTTCTTCCCTCCTTTACGCTCCTTTTTCCTTTCATTCCCCTTC
CGAGTCTAGGCGGGGCTTAATATGTANCGATAGATGCTCGTCACGCACTG
TTGCGCGTGCAGGATATCCGCGGCGAAAGAATTACTAGATAAAAAAATAC
TTATACTAGGGAATAGACCGATGAACGATGCCTGTAGACCAACGGGAGGA
GCGGGGAGAGCGAGACAAAGTGCGACGGACGTGGCTTGTGGATACAGAAA
ACCACCATCTATATCTATCAGATACTGCGTCGTTGATAGAGTGGTGGCNT
GCGTAAAGCCGACATCATCGCGATTTGTCCCCTCGTGATCTTCTATCGCG
TGCTCCATGCCGCGGGCGGCCGCACGCCTAAATTGCCTTCTCCGACTTTC
CCCCCCCATCTCTATATCTTTCCGGCCCCACCCCCCTTTCGAGTAATTGC
GCGATTAATACCCGTATAACCTTCCCCTATCGCGCCGATTTCTCCTACCC
CCATACCCCCATCCCCCCTAATGCCGGTTTTCCGTGTCGTGCTTCGCACG
TTCCCCCGTCGACGACTCTTCCTCGGTTGCGCTGACGCTATGGCCGCGTT
TCCTTCGGTTTCGGAGCAAATTCGGGATCCGCCATTGCTGCGGCTCCTGC
GTTGCGACTCCTTGCATCCCTACGCTACGAAATATCTATTCACCCGCGCC
AGTAGCCGCCACGATATATAACTCGTCCGTGTTTGTAATAGCAACGGCCC
CGTTCCCTATCCGTCTCTGTTTGCCTTACCCCTACATCCAGTCCGCCCTA
TTACTCCCCCTCCGCCCACCCTTTTTCCCCCGCATTTTATCCCCCGCCAC
CCGCGAAAGCCCGGTTCTCGGTTCGCCGCCTATGCATACTGTATTAGGGA
AGGTCCGTTAATACTTACCGGTTCCTGTTCGGATCCTCACAGGTCATTGT
TTGATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no394_k15.b1 MSMg01no394_k15.b1 CHROMAT_FILE:
MSMg01no394_k15.b1 PHD_FILE: MSMg01no394_k15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:40:07 2005
         (399 letters)



>mm_chr12_85760692_85761490
          Length = 799

 Score =  748 bits (387), Expect = 0.0
 Identities = 396/399 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcaatctttcctttaaacttttttttttttagctgaaagaaaatttaaggaactcagaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcaatctttcctttaaacttttttttttttagctgaaagaaaatttaaggaactcagaga 260

                                                                       
Query: 61  agaactatcaggagactcttagaagactagaaagcagattttttgaagaaaaggtattag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaactatcaggagactcttagaagactagaaagcagattttttgaagaaaaggtattag 320

                                                                       
Query: 121 tattaagacatgctttgtgggttggacctagccctcctgcacatatgttacagatgtgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tattaagacatgctttgtgggttggacctagccctcctgcacatatgttacagatgtgca 380

                                                                       
Query: 181 gtttggtcttcatgtggatctcgaacaatagcaattccacagactattccaaacgctgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtttggtcttcatgtggatctcgaacaatagcaattccacagactattccaaacgctgtt 440

                                                                       
Query: 241 gtcagtctgttttatttgttctagctgggctgccttgtctgacctcagtgggagagaatg 300
           ||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtcagtctgtggaatttgttctagctgggctgccttgtctgacctcagtgggagagaatg 500

                                                                       
Query: 301 aacctagccccacagacacttggtgtgccatggtggggggatagccagagggagcctcca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aacctagccccacagacacttggtgtgccatggtggggggatagccagagggagcctcca 560

                                                  
Query: 361 tcttctcagagggcaaagggagtggggaggaaggattgt 399
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcttctcagagggcaaagggagtggggaggaaggattgt 599


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 799
Length adjustment: 9
Effective length of query: 390
Effective length of database: 790
Effective search space:   308100
Effective search space used:   308100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)