BAC Information

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BAC

Clone NameMSMg01-394L10
Chromosome12 (Build37)
Map Location 104,016,447 - 104,016,807
singlet/doubletsinglet
Overlap genenone
Upstream geneFbln5, Trip11, Atxn3, LOC100040305, LOC100040297, Cpsf2, Slc24a4, Rin3, Lgmn, Golga5, Chga, Itpk1, Moap1, D230037D09Rik, 5730410I19Rik
Downstream geneBtbd7, EG634678, Cox8c, 9030205A07Rik, LOC667269, Prima1, EG544888, Asb2, Otub2, Ddx24, D12Ertd647e, Ifi27, 1810023F06Rik, 8430415E04Rik, Serpina10, Serpina6, Gm46, Serpina1f, EG435316, Serpina1b, Serpina1d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-394L10.T7 (MSMg01no394_l10.b1)MSMg01-394L10.TJ (MSMg01no394_l10.g1)
ACCAG495705AG495706
length786794
length of high quality
(start - end)
466 (46 - 511)242 (78 - 319)
definitionCHROMAT_FILE: MSMg01no394_l10.b1 PHD_FILE: MSMg01no394_l10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:40:12 2005CHROMAT_FILE: MSMg01no394_l10.g1 PHD_FILE: MSMg01no394_l10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:40:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTTCTAAAATTCGCGCCGCTAAACGAATCACTATTCAAAGAGGATCCGC
GGAATTCTCACATTCCCTATATTAACTCTTCAAATTAAAGGAAAAAGACT
AAATATTACTTCCTCACTTCTCAAAACCTTTTCACCTTTTTTTGTTCAAG
CATCACGTGATGCCCAGAAGACAGCATTCCACATCACTCCTCCCCAACTT
CTGTGCTGATTCTTTCTGCCTCTCCTTCTATTTGCCTAATCCTTGAAAGG
GGCGCTGTAGATGTCTTCATTTAGGGCTGACCAGTCAAGGGTCACAAGTT
CTCAGCAATCTGAGCAGTTATATTTTCTCTTAAGTAACCGACTGCAGCAC
TCGTGTCTGACCAGAAACCTACGTATTTACAAGGCCATTTGCCAGGTACA
GTGTGTCCATCTGCTGCTGCCTGGCACACCACTAGCCCATAGTTTCCAGA
ATGCCATCCCCTACTACAAATACCAAACCAAGTGATTTGAAACTTGGTAA
TTTCTAGGTACTGTGTCTCTTTTCTTAGCCATCCTATCAGATTGCTAGTT
ACTCTTCGCGCTCTCGGTTATTACCAACGTTCCCCTTTTCTGGCCAAGAC
GATGCCTTCTCCTAGGGTTTTACCTCTTGCACCATTTCCCTGTATAATAG
AATCCCTCCTTCTCCCCGATTGGGGTGCTGGAATTACTTCTCCCCACCCC
CCCTCTGACAATCACCGTTAATGAAAACTTTATATCATTATTGGTATTCT
TTACCCCTCTGTTTTCCCCACCTTCCTAACTGCTCG
TTCCGATGATATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTCACTGGTGAACTGATAGCACA
CTTGTTGGCCCTAAACCACCCTGCAGCAGCAAGGGCCTAAAGGGACAGAC
AGAGCTGATGGAGGGGGAGGCAGAAATTCAAGGTCATCCGTGGCTAACAA
GTAAATTGAAGGGTAGCCTGGGCTACAAAATATCTTGTCTTAAAAAAGAA
AAATGAAGCTAAGTAAAAGCAATCTCCCAGGTAGTTGTAATCCTGATTGT
GTGTGGACAGGACAATCAGGCTTTTTATACTACTGACATAAAAACAAACA
ATCTTTTTAACAAACACCCATCATGACCTCTGAGCTTGGCTATGACTCAT
CTGGTTCCAGTATAACGCACCATACTCAGCTTATGTACTCTTATTGTCGT
CGGATCGCTAGGCATCATCTGCTGTACGTTACGACCCGTTTCCCTGCCGC
TCCCAGCTCCTGCCCAATTCCTTCTGTCCTGCACTTCCTTCTGATTTTAC
TTCACGCCCCACTTGCTATACTCACCTTTGTACCTCATTTCCTGTTGTCC
CTTCTTATTGTCTTTCTCGCTTCCTCTTTCTTTTCGCTAAACATTGTCCC
TTTTTCGCTCCCCAATTTTACTACAACTTTTGCTACCTCCCCCCTGGCCT
TCATTTTTTATTGTTTGTATTCCTTCTTATCCCATTATGGCCTTCCCCCG
TTTTCTCTCCTAACTATATGCACTCTACCCCTATTTTTCTTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no394_l10.b1 MSMg01no394_l10.b1 CHROMAT_FILE:
MSMg01no394_l10.b1 PHD_FILE: MSMg01no394_l10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:40:12 2005
         (466 letters)



>mm_chr12_104015946_104016811
          Length = 866

 Score =  646 bits (334), Expect = 0.0
 Identities = 355/364 (97%), Gaps = 5/364 (1%)
 Strand = Plus / Minus

                                                                       
Query: 102 caagcatcacgtgatgcccagaagacagcattccacatcactcctccccaacttctgtgc 161
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 caagcatcacgtgatgcccggaagacagcattccacatcactcctccccaacttctgtgc 803

                                                                       
Query: 162 tgattctttctgcctctccttctatttgcctaatccttgaaaggggcgctgtagatgtct 221
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 802 tgattctttctgcctctccttccatttgcctaatccttgaaaggggcgctgtagatgtct 743

                                                                       
Query: 222 tcatttagggctgaccagtcaagggtcacaagttctcagcaatctgagcagttata--tt 279
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
Sbjct: 742 tcatttagggctgaccagtcaagggtcacaagttctcagcaatctgagcagttatagg-- 685

                                                                       
Query: 280 ttctcttaagtaaccgactgcagcactcgtgtctgaccagaaacctacgtatttacaagg 339
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 -tctcttaagtaaccgactgcagcactcgtgtctgaccagaaacctacgtatttacaagg 626

                                                                       
Query: 340 ccatttgccaggtacagtgtgtccatctgctgctgcctggcacaccactagcccatagtt 399
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ccatttgccaggtacagtgtgtccatctgctgctgcctggcacaccactagcccatagtt 566

                                                                       
Query: 400 tccagaatgccatcccctactacaaataccaaaccaagtgatttgaaacttggtaatttc 459
           |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 565 tccagaatgccatcccatactacaaatacaaaaccaagtgatttgaaacttggtaatttc 506

               
Query: 460 tagg 463
           ||||
Sbjct: 505 tagg 502


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space:   390336
Effective search space used:   390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)