CATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTAACTTCTCGATGGAAAACCAGTCTGGATTTGACATAAGCAAA
GAAATAATTACAGAAAAATATACTGGTACTACATCTGTGTGGGTTTTTTA
GACAGAAGGAGCTTGCTATGTACAATAAAAGAACATGGGAAGAGTTGGAG
GGGGAAGAAGAGGGGAGAGAATGATGTAAGCATATTTTAATTTAAGAAAT
TAAAAATAAATAAAAGGCACCAAAATGGAGACAGATTAAAGACATATGTC
TTTGCAGGCAGCCTAGAAGGTTGTGTGGGATTCCTGCATCTCCTAACACA
AACAATGGTACTAGATGCAAAGCCTTGGTCTGCTGCCAACTGGAAGTCAC
AAATGGATACAGCATTAATAAAACAGAAGGAGTGGATGAGGCCTTTTAAG
GCCCCTGGACAGGTAATGAGAAGATTACTCTATAACTACTTTCTATTAGA
GAAAAACAATATGCTCCAAGAGAAACAGCAACCAAAAGTCAGTTGTTACT
GAGGTTCGGTGTTTGAGGTAACCGACTTTCAAGAAAGGGTATTGTAAGAC
TAAGCAGCTTCTAATAAACCAACAATAAATCCATAAATCCATCCTGCTCA
GTCTGAAAAATATCACTTGTACATAAGCATTTTCCTGGCTTGACTTTCCC
TATTGTATAACCTTATTATATGGTGGTTCTCTGGCCTTATACTATTTCTT
TCCCCC

NNNAAAAAAATNNNNTNNNNNNNTNNCCTATTTANTNNTANNCTGGNGNC
GCCTGTTCGTCNACTTTANGTGACCTATANAATTTCCGCGNAATTAAGTG
GCCAGCACTGGNCAAACCATAAACTGCCTGCCTTCTCTCCCATCTTCTCT
TTATTTGTGCTCAACTTTTCCAGTTGTGCAACAGATTTTTAGAAGCTATC
NAAGCATTCAAACAGCAGTTCNNTGAGAATGNACCATTTTCCCAATTTCG
TGATTAAAANAATCGTNNCCTCATGAACAAATTNNNTTNANNCAAACNCC
GANCGCCCCCCTTTTTNACCCACACCCTCCTCCCTCCGGGGTGGGGTGGG
GAGGGGGGGGGGGNTTNNNNNNNTAATAAACCNAAANTTTTTTCCCCCTC
TTTTTCNCTTTTTTTTCTTTTCTTCTTAACAAAAAAAGNAAAAAAAAAAA
GTGGCGAAAAGGTTTGGGNNTTTCCCTATTTAACTTANCNNNNNNNTTTT
TTTAAAATTTAAAACAAAAATTTCTNNNTTTTTCTCTTAATTTCTCCTCC
TCCTTCTCCCTTCCCCTTTTTTCTTTTTTTTTTTCCCTTTTCCCGCCCCT
GGCGGG

Query= MSMg01no395_b16.b1 MSMg01no395_b16.b1 CHROMAT_FILE:
MSMg01no395_b16.b1 PHD_FILE: MSMg01no395_b16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:06:50 2005
         (543 letters)



>mm_chr12_75650406_75651347
          Length = 942

 Score = 1011 bits (523), Expect = 0.0
 Identities = 535/539 (99%), Gaps = 1/539 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctaacttctcgatggaaaaccagtctggatttgacataagcaaagaaataatta 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctaacttct-gatggaaaaccagtctggatttgacataagcaaagaaataatta 262

                                                                       
Query: 64  cagaaaaatatactggtactacatctgtgtgggttttttagacagaaggagcttgctatg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 cagaaaaatatactggtactacatctgtgtgggttttttagacagaaggagcttgctatg 322

                                                                       
Query: 124 tacaataaaagaacatgggaagagttggagggggaagaagaggggagagaatgatgtaag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tacaataaaagaacatgggaagagttggagggggaagaagaggggagagaatgatgtaag 382

                                                                       
Query: 184 catattttaatttaagaaattaaaaataaataaaaggcaccaaaatggagacagattaaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 catattttaatttaagaaattaaaaataaataaaaggcaccaaaatggagacagattaaa 442

                                                                       
Query: 244 gacatatgtctttgcaggcagcctagaaggttgtgtgggattcctgcatctcctaacaca 303
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 443 gacatatgtctttgcaggcagcctagaagggtgtgtgggattcctgcatctcctaacaca 502

                                                                       
Query: 304 aacaatggtactagatgcaaagccttggtctgctgccaactggaagtcacaaatggatac 363
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 503 aacaatggtactagatgcaaagccttggtctgctgccaactggaaatcacaaatggatac 562

                                                                       
Query: 364 agcattaataaaacagaaggagtggatgaggccttttaaggcccctggacaggtaatgag 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 agcattaataaaacagaaggagtggatgaggccttttaaggcccctggacaggtaatgag 622

                                                                       
Query: 424 aagattactctataactactttctattagagaaaaacaatatgctccaagagaaacagca 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 aagattactctataactactttctattagagaaaaacaatatgctccaagagaaacagca 682

                                                                      
Query: 484 accaaaagtcagttgttactgaggttcggtgtttgaggtaaccgactttcaagaaaggg 542
           ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 683 accaaaagtcagttgttacagaggttcggtgtttgaggtaaccgactttcaagaaaggg 741


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 942
Length adjustment: 10
Effective length of query: 533
Effective length of database: 932
Effective search space:   496756
Effective search space used:   496756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)