BAC Information

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BAC

Clone NameMSMg01-395N11
Chromosome12 (Build37)
Map Location 74,853,501 - 74,853,742
singlet/doubletsinglet
Overlap genePrkch
Upstream gene5033425G24Rik, Ppm1a, Six6os1, Six6, LOC100041234, Six1, Six4, Mnat1, Trmt5, Slc38a6, EG666356, Tmem30b, 2210039B01Rik
Downstream geneEG666385, LOC100041489, Hif1a, EG277089, Snapc1, Syt16, 1700086L19Rik, Dbpht2, LOC671971
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-395N11.T7 (MSMg01no395_n11.b1)MSMg01-395N11.TJ (MSMg01no395_n11.g1)
ACCAG496560AG496561
length697746
length of high quality
(start - end)
---242 (70 - 311)
definitionCHROMAT_FILE: MSMg01no395_n11.b1 PHD_FILE: MSMg01no395_n11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:48 2005CHROMAT_FILE: MSMg01no395_n11.g1 PHD_FILE: MSMg01no395_n11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTTTCTTTTTCTCCCTTTCATTAATTTCCAAAGTTCGCCGAACTGTTTT
CCAAACACCCTCACCATTTTTTTGTTTATACGCGCCAACTTGACTTTAAT
ATAGCCCCCCCCGCCCTATTACTTTTCCCGATCCCCACCATTTTCTTCTT
GGACCATCTTTTAAGCGCTGTAATAGGTGTATACTGAGCCATGCTTGTGA
TGTGTCACCCTGTTTGCTTTATCTGTTCCCGTCCTCCCCCCACTGTCCTT
TTTCTCATTTTCCCCCCTTTTTTTTTCTCGCACACTCGTTTCGTTTTCAC
TCGTCGCTAGCGTAATGACTGTTATTCTCTCTTACGAATTTCTAACCCTA
TTATTTTCCGCCCACCCCACATCATCATATTAAACTCAGAACCCTTTTTT
TTTTTTTATCCCCCCCACACACTTTATATAAACTTATTTCTACATCACCG
TTTTCCCCATTATTTTTGTTGTTCGTCTCTCCAAGTTTTTTCATAAAATC
CACCTTCCTTCCACCCTTTTAACACTTATTTTTTTTTTTTATGCCCTCCC
TTTATTCTCCTTACTCTTTTTGATCCCCCAGCGCATGCCCTATATACTTA
TTATTATTAACACACTTACACTACTAAGATTTCCCCCCTCCCTACCTCTT
TTTTTTTTTAAAGTTTTTCCCACATTTTATTTGATTTTTTTCAACCC
NTTCGATGCTGTGGTAGCCTGGCGGCGCCTGTTCTCAACATTAGGTGAAC
TATAGATTACACACGCGAATCTTGCCCAAGGGAGAAGAGAGACTATACAA
AGCCTGACACATAACTTGGGGGGCATGGCATTGGTGATTTTATAATCTCA
TATTTGGATTAGTCTCAAGCTTGGGTTGGGAGAGGGGAGCAGGGTAGGGG
GAGCAAACCTGAAGAGATCAGTAAGAAAGAGTTTAGGGTGTCAATTTGAA
AGGAAGTAATGATGGTGAGGGTTACGGTTGGGGTGGTAGGCACAGAGAGC
TGAGTAAGCTTCGATCCTGTGTACACAGATGAGAAATGGCTTTTGGACCA
GAGAAATATCAGAGTTAAATGCAGAGAGATGGCATAAGGTTCTGACTCAC
AGAATTTGATTTCGGAAATGTGTTTGTTTGTTTGCTTGTTTGTTTGTTTG
TTTTAGACCCCACAGTATAAATGTTTAACGGCTTCCGAATACACATGGGT
AATAGCTGGAGGAAAGAGCTTGCCACTATCTACGATGGAGTGGATGATCT
CACCCAGATAGAGGCATGAAGTAAGATAACCTAGGAGAGCTTATATGTCC
CCTTATTGCGGGGGCTGTCCGAGTCTTTTCCCTGACCTTTTTTTTTTTTT
TTTGTTCATATCTTCCAGCATTCCGTCCTTGTTATTCCCTTACCCTTGCC
TCCTTTTATGTTGCCCAATTTCTTCTTTCCTTCTCCCTTTCTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no395_n11.g1 MSMg01no395_n11.g1 CHROMAT_FILE:
MSMg01no395_n11.g1 PHD_FILE: MSMg01no395_n11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:48 2005
         (242 letters)



>mm_chr12_74853301_74853942
          Length = 642

 Score =  429 bits (222), Expect = e-125
 Identities = 237/242 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttgcccaagggagaagagagactatacaaagcctgacacataacttggggggcatggc 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 442 tcttgcccaagggagaagagagactatacaaagcctgacacagaacttggggggcatggc 383

                                                                       
Query: 61  attggtgattttataatctcatatttggattagtctcaagcttgggttgggagaggggag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 attggtgattttataatctcatatttggattagtctcaagcttgggttgggagaggggag 323

                                                                       
Query: 121 cagggtagggggagcaaacctgaagagatcagtaagaaagagtttagggtgtcaatttga 180
           ||||||||||||||||||||||||||||||||||||||||||||| |||||||||   ||
Sbjct: 322 cagggtagggggagcaaacctgaagagatcagtaagaaagagtttggggtgtcaaaagga 263

                                                                       
Query: 181 aaggaagtaatgatggtgagggttacggttggggtggtaggcacagagagctgagtaagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aaggaagtaatgatggtgagggttacggttggggtggtaggcacagagagctgagtaagc 203

             
Query: 241 tt 242
           ||
Sbjct: 202 tt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)