BAC Information

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BAC

Clone NameMSMg01-397F18
Chromosome12 (Build37)
Map Location 92,967,306 - 92,967,686
singlet/doubletsinglet
Overlap geneSton2
Upstream geneDio2, LOC100039295, 4930544I03Rik, 4930534B04Rik, 5430427M07Rik, Tshr, Gtf2a1, EG666955
Downstream geneLOC100039631, Sel1l, LOC100039367, EG432681, LOC667589, LOC100039387, LOC100039425, LOC628116
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-397F18.T7 (MSMg01no397_f18.b1)MSMg01-397F18.TJ (MSMg01no397_f18.g1)
ACCAG497718AG497719
length802837
length of high quality
(start - end)
379 (64 - 442)240 (68 - 307)
definitionCHROMAT_FILE: MSMg01no397_f18.b1 PHD_FILE: MSMg01no397_f18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:46 2005CHROMAT_FILE: MSMg01no397_f18.g1 PHD_FILE: MSMg01no397_f18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCACAGAATCCGCGGAATTCA
GGCATGATATCCAAATGCCTTCCTTATTGGTGACTCTCCTGCTACTTCAG
AGTGGCAATATAAAGCACCCATCCCCAACACAGGTTCAAAGGCGCTTCTG
CCCATTCCCAGAAGTGCCCGTGTTGTACTCAGGGTTTTACTGTTGTGAAG
ACATCATGACCACGTCACCTCTTACAAAGCAAAGCATTTCATTGCAGCTG
GCTTATAGTTTCAGAGGTGCAGTCCATTATTGTCGTGGTGGGAAGCATGG
CAGATTGCAGGTAGACATGGTGCTGGAGAAGGAGCTGAGAGTTCTACATC
TTGATCCGCAGGCAGCAAGAGGAGACTGTGTGTCACACTCAGCATAGCTT
GATCATATGACCCTGTCCCCACAAAGACATAATTCCTCCAACAAAGCCAC
ACCTCCTAATAGCGTTTCTTCCTATGGGCCTATGGGGTTTGATTACTTTT
TTCCTTCTTCCTCCGTTACGGACTTATCTCCTTGCTTGGCTATTTTACCC
CTCTCATATCTACTTATTGCTCCCGCCCATTCTCTTCTTCACTTTTTTTC
TTCACTCCTATTTTATTTTTTCGCCCCCCCTTTCCCTTTTGTTTATTTTC
CCTCCCCTACCTTCTTCTCCTCTGTTTCCTTCTTTCCTCTCTCCCCCCTC
TTTTCTTTCTCCTTACTTTTTCTCCCCTCTTATCATCCCCATTCCTTTAT
TATCTACGCCCATTCACTTCCTTTTTTTTCCCCTTATTCTTCCTCTTCTC
TN
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTCGAGACATTCAAGGCCAGCCTGGTCTACATTGAAAGTTCCTGA
CTAGCTGGGGCATCCTATTGGGAGGAGGAGGCATCCTCTGAAGCACAAAA
AAAAAAAAAAACCCACCAGTGCTCTGATTGGCCCCAGCTTTCATTTCTTA
CCTGTGTTAGTTACCTTTTTGTTGCTGTGATAGAATATCCTGATTTTTTT
AACTTAGAAAACATAAGGGTTAATGATGGCTTACAGACCCAGAAAGAAAC
AGCTCATCATTTCAGTAATTTAGAGCAACCAACGCGCAGAGTGACCACAC
TTTTTTTTCACACAGGAAGTACACGGAGAGACTACGCATTGCATTCATAT
TACCCCCCCCCCACCCCAGTCTCCCAGGGAAGGGCCTACCCTAAACAATG
TTCCTACTTTTATAAAAGACCCAACTCATCTCTCAAACTTCTAATACCCC
CCACATTCACAAATTTTCCACCGTTATTTAATACAAACTTCACTTCCCCC
ATGTCCCCCTATCTCCTTCTTTTATTTCGCCCGCGAATTAATTTTTCTTT
TATCTTCTTCCCTCTTATTTCTACCCCGTATTATTCCTTTACTTTCGCTC
ATTTATAATCTCCTACTTAATCATTTCCCCCCCTTCTTTCCTTTCTTCAT
TCTACCCTAACTTCCCGATTCCGATCCCTCTTCCCCTTAATCTCATATTT
TATTCCCTTCTTGCATCCTTTACTTTACCCCTCCATTATCTCCCTCTCTC
TTTCTTTGTTTCCTTTCCTTCTTCTCCTTCTCCCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no397_f18.b1 MSMg01no397_f18.b1 CHROMAT_FILE:
MSMg01no397_f18.b1 PHD_FILE: MSMg01no397_f18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:46 2005
         (379 letters)



>mm_chr12_92967106_92967884
          Length = 779

 Score =  629 bits (325), Expect = 0.0
 Identities = 367/381 (96%), Gaps = 2/381 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatgccttccttattggtgactctcctgctacttcagagtggcaatataaagcacccatc 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct: 201 aatgccttccttattggtgactctcctgctacttcagagtggcgatataaagcacccgtc 260

                                                                       
Query: 61  cccaacacaggttcaaaggcgcttctgcccattcccagaagtgcccgtgttgtactcagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 261 cccaacacaggttcaaaggcgcttctgcccattcccagaagtgcccgtgtcatactcagg 320

                                                                       
Query: 121 gttttactgttgtg-a-agacatcatgaccacgtcacctcttacaaagcaaagcatttca 178
            ||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 attttactgttgtgtagagacaccatgaccacgtcacctcttacaaagcaaagcatttca 380

                                                                       
Query: 179 ttgcagctggcttatagtttcagaggtgcagtccattattgtcgtggtgggaagcatggc 238
           |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 381 ttgcagctggcttatagtttcagaagtgtagtccattattgtcgtggtgggaagcatggc 440

                                                                       
Query: 239 agattgcaggtagacatggtgctggagaaggagctgagagttctacatcttgatccgcag 298
           |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 441 agattgcaggcagacatggtgctggagaaggagctgaaagttctacatcttgatccgcag 500

                                                                       
Query: 299 gcagcaagaggagactgtgtgtcacactcagcatagcttgatcatatgaccctgtcccca 358
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 501 gcagcaagaggagactgtgtgtcacactcagcatagcttgatcatatgagcctgtcccca 560

                                
Query: 359 caaagacataattcctccaac 379
           || ||||||||||||||||||
Sbjct: 561 cagagacataattcctccaac 581


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 779
Length adjustment: 9
Effective length of query: 370
Effective length of database: 770
Effective search space:   284900
Effective search space used:   284900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)