BAC Information

Click to search

BAC

Clone NameMSMg01-398I11
Chromosome12 (Build37)
Map Location 90,040,766 - 90,041,014
singlet/doubletsinglet
Overlap genenone
Upstream geneBB287469, LOC100038964, LOC673658, LOC100038992, LOC100038982, LOC674027, LOC100039042, LOC100039052, LOC100039076, LOC100039087, LOC100039100, LOC100039191, LOC100039203, LOC627873, LOC100039162, LOC627881, LOC100039129, LOC636517, LOC544884, LOC100039226, LOC432715, EG667350, LOC546543, EG667388, LOC627971, LOC667395, LOC100039315, EG638008, EG666862, EG435337, LOC100039154, LOC633093, LOC667440, LOC100039383, EG266459, LOC667475, LOC620915, LOC435314, Adck1, LOC100039261
Downstream geneEG666915, Nrxn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-398I11.T7 (MSMg01no398_i11.b1)MSMg01-398I11.TJ (MSMg01no398_i11.g1)
ACCAG498609AG498610
length772761
length of high quality
(start - end)
249 (65 - 313)116 (122 - 237)
definitionCHROMAT_FILE: MSMg01no398_i11.b1 PHD_FILE: MSMg01no398_i11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:17 2005CHROMAT_FILE: MSMg01no398_i11.g1 PHD_FILE: MSMg01no398_i11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTTGAATTTCTGCAAAGATGCACAGAAGATACTCAGCTGTTCTTACA
TAGCCCAGGAGCCCCAAAGCCAAGAGACTATGCAGACAACTTTCTACACT
TTGTCTCATTCAACACTCTCAGACACTCTGAGGTCAGAACATGATGAAGA
GGGTGGGCTCTGAAACCAGAGAGTCTAGGTACCAAGTCCAGATTTACCTT
TTATCAGCACAATCTTAGACAGATCACTTGACCCCATTTCTCAAGTTCCT
TACCTACAAGGTAGAATTATATTTGTGTGAAGAGTTGGTTTAGGAGCTGC
TACATACATGCAAAGCAGTTACAACCACATGTCTATCAAGCAAATTCTCT
GTAGTTGTTAGGTGTGGCCAGTTATTGTTATTACTGCTAGTGAAGATAAC
CTCACAAACTTTATCCAAATACTTACAGTCTATAAATGGACAAGAGCAGA
TTTCAGTCTGGATTATTTTCAACCTGCGGATCACACTTTTAGTTACTTAT
CCCTAATTTTGCCTGTGTTCCAAATCTCTCTGCCCCTGTTTCTTCCCACA
ACCGAGTCCTTCCCTGACTCTTGTCTCCTCGAGGTTCGCTATTTCATCCT
TTGCCCCTTTAACTTTGAGGTTCCCTTTTCCGGGCCCAGGCTTCTTCCTC
TTGGCAAAGGGTGAAATCCTTTTTGGCTTGACCCGGCTTCTGACTGTTGC
TTCTCTCTCTCTTACCTTTATA
TGCAGTGGGAGGCCTGGNGGCGCCTGGTTCCGAACCTGAGGNGACCNANA
GAATTTTTCAACACCCCCGGANCNNNCCAAGACNNNNAACANGAAGGGAG
GCNGAANTTTGNCACCCGANCTTTCAGCATCTAGTGAAATGATCATGTGT
GTGTGTTTTTTTTCTTTGAGTTTGCTTATGTACTGGATTACATTGATGGA
TTTCTGTATATTGAACCACCCCTGAATCCCTGGAATGAATTTTATTTGGT
CATGATGAATGATCATATTGATGTGTTCTTGGACTCAGTTGGCAAGATTT
TTGAGTTTTTTTTTTTCAACGNCCACAAGGGAGACCGGCCCGAACACNCC
TTTGCCCGCCCCCCGNGNGGCCCATGTACAAGCGTAATTGTGGCTTCATA
GAACGCACCGCGTAGTGTTCCTATTGTTTCTACTTTGAAGAGTATCGGCA
TCACGCCCCCCTTAAAGAATTCCACACTAAACCCATCTGGTCCTGCGCCT
TTTTTGCTTGCGGCCCTACTATTGACTGACTGCTCTCTATTTCTTCATGC
CCCACGCGACCGCCCATATGCCTTATCCCATCCTGCCTTACTTTCGCCTC
CTGTTACGTGCCTACCACCCCGCCCACTCCCCCAATATTTTTTTTCTTTT
TTTCCCTGTCCTTCCCCTCTTCCCCCGTCCTTCCCTCCCCTTTTTGCCCT
CACCCCTCTCTACCATCTCCCCCTCCTCCCTCCTTCATCCCTTCAATCTC
CTTTTTCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no398_i11.b1 MSMg01no398_i11.b1 CHROMAT_FILE:
MSMg01no398_i11.b1 PHD_FILE: MSMg01no398_i11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:17 2005
         (249 letters)



>mm_chr12_90040566_90041214
          Length = 649

 Score =  482 bits (249), Expect = e-140
 Identities = 249/249 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcaaagatgcacagaagatactcagctgttcttacatagcccaggagccccaaagccaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 gcaaagatgcacagaagatactcagctgttcttacatagcccaggagccccaaagccaag 390

                                                                       
Query: 61  agactatgcagacaactttctacactttgtctcattcaacactctcagacactctgaggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 agactatgcagacaactttctacactttgtctcattcaacactctcagacactctgaggt 330

                                                                       
Query: 121 cagaacatgatgaagagggtgggctctgaaaccagagagtctaggtaccaagtccagatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 cagaacatgatgaagagggtgggctctgaaaccagagagtctaggtaccaagtccagatt 270

                                                                       
Query: 181 taccttttatcagcacaatcttagacagatcacttgaccccatttctcaagttccttacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 taccttttatcagcacaatcttagacagatcacttgaccccatttctcaagttccttacc 210

                    
Query: 241 tacaaggta 249
           |||||||||
Sbjct: 209 tacaaggta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)