BAC Information

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BAC

Clone NameMSMg01-399A18
Chromosome12 (Build37)
Map Location 50,912,697 - 50,912,809
singlet/doubletsinglet
Overlap genenone
Upstream geneGA_x5J8B7W54VK-284379-285078, Olfr1399-ps1, EG665036, LOC100039366, Foxg1, ENSMUSG00000045946, LOC100039424, LOC665071
Downstream geneLOC665077, LOC100039455, Prkcm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-399A18.T7 (MSMg01no399_a18.b1)MSMg01-399A18.TJ (MSMg01no399_a18.g1)
ACCAG499006AG499007
length729808
length of high quality
(start - end)
522 (73 - 594)111 (77 - 187)
definitionCHROMAT_FILE: MSMg01no399_a18.b1 PHD_FILE: MSMg01no399_a18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:57 2005CHROMAT_FILE: MSMg01no399_a18.g1 PHD_FILE: MSMg01no399_a18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCG
GAATTCATACCATATTTCAGATTTGGCAGGTAGGTTACCTCATTTGGGAT
TTTTTTCTCCTAGCTATATCCATTTACCTGTAAATTTCATTATGAGACAT
ATATATATATAATTTATTAGATATTTTCTTTATTTATATTTCAAATGCTA
TCCCAAAAGTTCCCTATACCTCCCCTCCCCCCTGCTACACACCTACCTAC
CCACTCCCACTTCTTGGCCCTGGCATTCCCCTGTACTGGGGCATATAAAA
TTTGCAAGAACAAGGGCCGTCTCTATGTTATATTTTAAACAACTAAGCAA
TCTTTCATTGTGTAAATGTACCATATTTTATTTATTCTTTCATCTGTAGA
CTGAGATCTAGGATTTTCCTAACGTCTGGCTATTATGAATAGAGAAATAA
TGAACATACTCCAACAAGTGTTTGTAAAAAGATGAAACATCCGTTGGATG
TATGTCCTAGTGTACTACAGGTGGATCTTCGGGTAGATTAATTTCCAGTT
CTCTGAGCAACTGTTGTATTGAATTCCATACTGATTGTATAAGGCTAGAG
TCCCACTATCAATGGATGAATACTCACCATTCATTCACCCAGCATGATAC
ATCATTTGTTTTACTGATCTTGGTCACACTAAAGGGGCTATAATAATACC
TCAAAGTAGTTTTGATTTGTATTTTCCTG
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGATGTCACAGTTTAGTACACAG
TGAAGGTCAGTTATTACTTCATTATAATTATCCAAGGGCATCATTATACT
ATATTTGATTGAGTTTCTTTTTTTTAAGAGCTTAAGAATTGTAAATGCCT
CTCACTCTGTATTACATGTGTGTGTGTGCGTGTGTGTGTGTGCGCGTGTG
CGCGTTCCTATCCCCTTCCTTCTCCCCCTTACTTCCTTCTCCATTTTCTT
TTTCCTCTTCCCTCCTTTCTTCCCCCTCCTTTTTTCTTTTTCCTCTTCTC
CTCCCTTTCTTTTTCATTTCTTTTTCCCTTTTTCCTTTTTCTCTCTTTCC
CTATAACCCCCTTATTTCCCTTCACCCTTCTTCTTTTTTTTTCCTTTTCC
CCCCAACCACTTTATTCCTTTCCCCCCTTATCTCACAAACACATTTTTTC
CTTTTTTCTTCTTCTCTCCTTTTTTTCCCTCTTTTTTCCTTTTTCCCCCC
ACCCCATTTTCCTTTTTTTTCCTCTTCCCCCCCCCCTCTTCCCCTTTCTT
CTTTCCTCCCCCCTCTTCCTTTTTTCTATCTTACCACCACCCCCTCAATT
TACTTTTTTATAAATTTTTCCCCCCCCTTTACCCTTCCTCTTTCCCTCTC
CGGTTCCTTTTCTCCCCCTTCTCTTATTCTCTCTTTGTTCTTCCTCCCCC
CCTCCTCTTCCCTCCCTCTTCTTTCCTCTTCCCTCTCTGTTTTTTATCCC
CCCCCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no399_a18.g1 MSMg01no399_a18.g1 CHROMAT_FILE:
MSMg01no399_a18.g1 PHD_FILE: MSMg01no399_a18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:57 2005
         (111 letters)



>mm_chr12_50912497_50913009
          Length = 513

 Score =  207 bits (107), Expect = 2e-58
 Identities = 111/113 (98%), Gaps = 2/113 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagatgtcacagtttagtacacagtgaaggtcagttattacttcattataattatccaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 aagatgtcacagtttagtacacagtgaaggtcagttattacttcattataattatccaag 254

                                                                
Query: 61  ggcatcattatactatatttgattgagtttc--ttttttttaagagcttaaga 111
           |||||||||||||||||||||||||||||||  ||||||||||||||||||||
Sbjct: 253 ggcatcattatactatatttgattgagtttcttttttttttaagagcttaaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 111
Length of database: 513
Length adjustment: 8
Effective length of query: 103
Effective length of database: 505
Effective search space:    52015
Effective search space used:    52015
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)