BAC Information

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BAC

Clone NameMSMg01-399I02
Chromosome12 (Build37)
Map Location 76,671,258 - 76,671,588
singlet/doubletsinglet
Overlap genePpp2r5e
Upstream geneKcnh5, Rhoj, Gphb5
Downstream geneWdr89, LOC665931, Sgpp1, Syne2, Esr2, LOC665957, Tex21, Mthfd1, Akap5, Zbtb25, Zbtb1, Hspa2, Gm70, LOC100041694, Plekhg3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-399I02.T7 (MSMg01no399_i02.b1)MSMg01-399I02.TJ (MSMg01no399_i02.g1)
ACCAG499353AG499354
length726738
length of high quality
(start - end)
249 (75 - 323)331 (79 - 409)
definitionCHROMAT_FILE: MSMg01no399_i02.b1 PHD_FILE: MSMg01no399_i02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:32 2005CHROMAT_FILE: MSMg01no399_i02.g1 PHD_FILE: MSMg01no399_i02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCTCTAGAATTTGCGGCGCTATACGACTCCTANATCCCGAGCTCCGCG
GAATTCAGTGTACTTACTATACACTAGATTGCATCCATTCTTGAGTCACC
TGGAGTAAACACAATATTGACATTAGTTGTATTATTTTTTAAATTTATTT
TATTTTCCTTATGTATATGTGGGGAGGGTGTATGTGCACATGACTGCAAG
AACCTGCAGAGACAGGTCCCTGGAACATGAGTTATGGGTGGTTATAAGCC
ACCCTACGTGGGCTGGGAAACAAACTTGGGTCCTCTACAGGGACAGTACA
TTCTTTTAACTGCTGAGCCCTGTTTTTTTGCTTCCCAATTCCTGAATGGG
CAGGCCCGATTGCTGACCTGACCCTACTTCATTTTGCTTTTATCCATTCC
AGTACCACGGATTAATCGCCCCCACCTTATTTGTATCCGTGCTTTCTGTA
TGCCAAGACCCCTCCCTTCCCGATACTGCCCTTCACCCTCTTTGCCCTTC
GCTGATCTCCGCCCCCCCGTAACTACCACTGACCCCGCCTAGCTTGTCCT
CCTGTTCCCCTTTCCATTACTCTATCTCATTTATTCGCCCCCATTCTTTC
TGTCCTACTGCCCCCACTCTGCTTCCCCCCGCCCCTTTTCCCCCCCCCCG
CCCTCAGTCCCTTTTTTTTTTTTCTCCAATACCCTCCCCCGTCGCACGCT
CTCTGTGCCTCTCGCCACTACCACTT
CCCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCTTCCATATTAAGTTGTTTG
GCAGCCACTTACATAGATTGCATCACAATCCTTATCAAGGATCTTTTTGT
GCCTGCTGTGCCCAAAGCACCAAATCTCCTGCTAACCAGAACATGCCACA
ATCATAAGCCTGTGAAGACTGCCATCCATTTCCAAATCCCAAAATGACCT
AAGGTAAACTATTGAGTTAAAGCAGTATTATAATGGGTTAGTTTCTAAAA
GAGCTCACCCATTATCACCAAAGAGAAATCAACAGCTGTGAAAGACCCCA
CTTTCTCTTTAAAAACAAAGAACAGAGGAAAAGGAAACCTATCTATTTAA
TGGCTGGGAGAAAACTGTCTTTTTGGAACCAAAACAGGAATTGTTGGATC
ATTGAATGAAAGTAGCCATCCCAAAGTTCAGAGACCAGTTTATCTGACTT
GTGAAAGTGGTTATCCAGTACAAAAGAAAATTTCTTGTAGCCTGACGCTG
ATCAGTACCGATTCTACAGGTTCCCTCTCCGAAGAATGCCCCCTTCTACG
TCCGTTTCACATACCCCACTCCGTTCCTCTTCCTGGCGCACGATTTATAA
GGATATTATTGCAATTTTTACTGAAACCCACTTTTCCCACCAACCCTTAA
TATACCTTCTGGAAATATGTATATTTCCCCCACCTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no399_i02.g1 MSMg01no399_i02.g1 CHROMAT_FILE:
MSMg01no399_i02.g1 PHD_FILE: MSMg01no399_i02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:32 2005
         (331 letters)



>mm_chr12_76671058_76671788
          Length = 731

 Score =  617 bits (319), Expect = 0.0
 Identities = 328/331 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccttccatattaagttgtttggcagccacttacatagattgcatcacaatccttatcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccttccatattaagttgtttggcagccacttacatagattgcatcacaatccttatcaa 260

                                                                       
Query: 61  ggatctttttgtgcctgctgtgcccaaagcaccaaatctcctgctaaccagaacatgcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggatctttttgtgcctgctgtgcccaaagcaccaaatctcctgctaaccagaacatgcca 320

                                                                       
Query: 121 caatcataagcctgtgaagactgccatccatttccaaatcccaaaatgacctaaggtaaa 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caatcataagcctgtgaagacggccatccatttccaaatcccaaaatgacctaaggtaaa 380

                                                                       
Query: 181 ctattgagttaaagcagtattataatgggttagtttctaaaagagctcacccattatcac 240
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 ctattgagttaaagcagtattataatgggttagtttctaaaagagctcactcattatcac 440

                                                                       
Query: 241 caaagagaaatcaacagctgtgaaagaccccactttctctttaaaaacaaagaacagagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaagagaaatcaacagctgtgaaagaccccactttctctttaaaaacaaagaacagagg 500

                                          
Query: 301 aaaaggaaacctatctatttaatggctggga 331
           ||||||||||||| |||||||||||||||||
Sbjct: 501 aaaaggaaacctagctatttaatggctggga 531


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 731
Length adjustment: 9
Effective length of query: 322
Effective length of database: 722
Effective search space:   232484
Effective search space used:   232484
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)